Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 574 a.a., DNA primase (RefSeq) from Shewanella sp. ANA-3

 Score =  438 bits (1126), Expect = e-127
 Identities = 256/637 (40%), Positives = 366/637 (57%), Gaps = 75/637 (11%)

Query: 5   IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGC 64
           IP+ FI++L+ RTDIV+++  ++ +KKAGKNY+ACCPFH EK+PSF+VS DKQFY+CFGC
Sbjct: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62

Query: 65  GAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPLLTAAA 124
           GA GNA+ F+M++D LDF  A+E+LA   G+E+PRE+ G   +        LY L+  A+
Sbjct: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQ-GTGKRQDDGLSRDLYQLMEEAS 121

Query: 125 DFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQRAMI 184
            F++  L+ H  ++  +DYL  RGL+ +I   FG+GFAP GWD L          Q  ++
Sbjct: 122 RFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQDAQDKLL 181

Query: 185 DAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPVFHKG 244
            AG+LI N ++GKRYDRFRDR+MFPIRD RGR+I FGGRVLGD  PKYLNSPETP+FHKG
Sbjct: 182 TAGMLISN-DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKG 240

Query: 245 QELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHMKRLFRVVP 304
            ELYGLYE ++ +R+ D++++VEGYMDV+ALAQ G+  AVA+LGT+T+ E  + L R   
Sbjct: 241 NELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQFQLLLRSAK 300

Query: 305 NVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAFRARI 364
            V+ C+DGD+AG  AAWRALE  LP L+ G + RF+FLP+ EDPD++VR  G DAF  ++
Sbjct: 301 EVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIGKDAFE-QM 359

Query: 365 NQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLMRQRLSEITGL 424
            + A  L ++ F  L  +        K ++A  A  LI+K+    L+ L+ + L+   G+
Sbjct: 360 MESAITLPEFLFDTLATKFG----TDKGNLAKQAFGLIEKIQDTVLQNLLLENLAHKLGM 415

Query: 425 NSEAVNQLVHSAPQEAPPAYDPGIDYDAMPDFADYHQPQQDYAPQQEWTPKKTGSGGKKW 484
           NS                        D M                     KK G   K+ 
Sbjct: 416 NSS-----------------------DDM--------------------KKKLGFSVKQ- 431

Query: 485 DKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLA---ALRTLLHHPQLAEKVEDAGHFAAED 541
             KP    G +G R  P    +   V+ P L    + +  L+H Q+              
Sbjct: 432 -TKPTASTGLKG-RGTPLRLAIALLVQHPELGVGLSPQPALNHLQM-------------- 475

Query: 542 HSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIEGDNLEQQFFDT 601
                LL  LLE  +++ +LNS QL+ ++  +     L  LA+ +  +  +NL  +F   
Sbjct: 476 -PGIDLLPLLLELTREH-RLNSAQLLEQFRDSPHSGTLHKLAQWDHQVADENLLGEFKKA 533

Query: 602 ITSLSARQRERNLEQLLRKARQSELTSEEKNQLRDLL 638
           +  L+ +  E+  ++L  K      T EE  QL+ L+
Sbjct: 534 LIWLNNQYIEQRYQELSLKQTH---TKEEWIQLQKLI 567