Pairwise Alignments

Query, 461 a.a., ATP-dependent 23S rRNA helicase DbpA from Pseudomonas fluorescens FW300-N2E2

Subject, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  499 bits (1286), Expect = e-146
 Identities = 256/456 (56%), Positives = 322/456 (70%), Gaps = 1/456 (0%)

Query: 7   AFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLN 66
           AF+TL L   +L NL S+GY +MTPIQAQSLP IL G D+I Q KTGSGKTAAFG+GLLN
Sbjct: 2   AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61

Query: 67  PINPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEHGA 126
            ++ + F  Q LV+CPTRELADQVA+EIR LAR   N+KVLTLCGGV  GPQI SLEHGA
Sbjct: 62  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121

Query: 127 HIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTLLF 186
           HIIVGTPGRI  HL +  L L  LN L+LDEADRML+MGF   ++ II+Q+P  RQTLLF
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181

Query: 187 SATYPVGIKQLSSKFMRNPQQVKAEAFHSDAQIEQRFYEIAPEE-RMDAVVKVLAHFRPA 245
           SAT+P  I+ ++ + M NP  VKA   H    IEQ FY++  ++ RM A+  +L   +P 
Sbjct: 182 SATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241

Query: 246 SCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAA 305
           S V FC TK++ Q+  D L   G S + LHGDLEQRDRD+ L  FAN+S  VLVATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQKS 365
           RGLDIDALD V N  +A D+E+HIHR+GRTGRAG KG A +     + ++   +E+    
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361

Query: 366 PLSWDQLDNLKSQGGGPLLPAMSTLCIGAGRKDKVRPGDILGALTGEAGIPGAQVGKIAI 425
            ++ + L +L   G  P  P M TL I  G+K+K+RPGDILGALTG+ GI G QVGKI +
Sbjct: 362 EITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421

Query: 426 FDFQAYVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461
            D++AYVAV R +AK+AL ++  G+IKG+S R  ++
Sbjct: 422 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLM 457