Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  300 bits (769), Expect = 8e-86
 Identities = 159/376 (42%), Positives = 233/376 (61%), Gaps = 11/376 (2%)

Query: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           FA+LG+  A++ AI A GY +P+P+Q +AIP +L G D++  AQTGTGKT  FALPIL +
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSA-CIFGGVGMNP 121
           + P            ++ + L+L PTRELA QV  +F+ Y++ +  ++   ++GG  M P
Sbjct: 68  IDP----------ARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGP 117

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q++A+ +G  V+VA PGRL+D   + S  LS +  LVLDEAD ML +GF+ D++ +   +
Sbjct: 118 QLKAIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAM 177

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLA 241
           P  RQ +LFSAT    I  +A K L  P+ I++     TV RIEQ    + A  K   + 
Sbjct: 178 PESRQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL 237

Query: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVR 301
            L+    ++ ++ F RTK     LA  L+  G  A A++G+ +QN R + +   K G + 
Sbjct: 238 RLLEVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLD 297

Query: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
           I+VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 298 IVVATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357

Query: 362 KSIERMTKQKIADGDL 377
           + IER+T QK+A+  L
Sbjct: 358 QVIERVTNQKVAEARL 373