Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  441 bits (1134), Expect = e-128
 Identities = 241/451 (53%), Positives = 304/451 (67%), Gaps = 9/451 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F SLGLS  ++ AIE  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LPIL
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           E L       K  +    Q R L+LTPTRELAAQ+ ++  +Y R L   SA +FGGV +N
Sbjct: 61  ELLA------KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+Q M +G D+LVA PGRL+DL  Q +V    +EILVLDEADRMLDMGF+ D+ K+L  
Sbjct: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP KRQNLLFSATFS +I +LA  L++NP  I V+P N+T   +EQ ++      K  +L
Sbjct: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
             L+  G W+QVLVF RTKHGANRLA YL++ GL A AIHGNKSQ ART+ALADFKAGEV
Sbjct: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RILVATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERP-DVRNPRNARGPRGDGPNGSGGGG 419
           L +IER+T+  +   +L GF+  T +  + ++  RP   + P+  +   G G N  G   
Sbjct: 355 LFAIERLTQALLPRVNLAGFE-PTNQLPESKLDTRPLKPKKPKKPKKVEGAGEN-KGSVA 412

Query: 420 GRKDKGKDKGKEKSASNSNGRGERPAREQKP 450
             K K   +G+    + +  +G   +  +KP
Sbjct: 413 ENKPKAGHRGQPTGQARTAKKGGTHSEPKKP 443