Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  324 bits (831), Expect = 5e-93
 Identities = 199/485 (41%), Positives = 267/485 (55%), Gaps = 41/485 (8%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +FA LGLS+ ++ A+  AGYT PTP+Q  AIP  LQ RD++  AQTGTGKT  F LP+L 
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
            L       +  R   R PR L+L PTRELAAQV E+F  Y ++ K   A + GGV  + 
Sbjct: 63  LL-------EKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDE 115

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q + + RG DVL+  PGRLLD   +G + ++ VEILV+DEADRMLDMGF+ D++++   +
Sbjct: 116 QDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLI 175

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAS--HKRAL 239
           P  RQ L FSAT   +I  LA + L NPER+EV   ++T   + QR          KRA+
Sbjct: 176 PFTRQTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAV 235

Query: 240 LAHLITAGA-WEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAG 298
           L  LI +    +  ++F   K     L   LD+HG    A+HG+  Q +R   LA+FK G
Sbjct: 236 LRELIRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDG 295

Query: 299 EVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
            +++LVA+D+AARGLDI  + HV NF++P   EDYVHRIGRTGRAGRSG A ++V   E 
Sbjct: 296 NIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRET 355

Query: 359 KLLKSIERMTKQKIA--DGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPR-------- 408
           K   +IE++  QK+   +GDL         +E PE  E  D R  R + G +        
Sbjct: 356 KFSDAIEKLIGQKVEWFNGDL---------SELPEPMESHDSRRDRGSDGRKDRKRERPG 406

Query: 409 ---GDGPNGSGGGGG---------RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPA 456
               D    +  G           R D  K +    S    NGR +RP R Q        
Sbjct: 407 KVHADRKPVTASGNNTEELETVPERVDAVKIERNADSKDRHNGRSDRPGRAQNAANDDNR 466

Query: 457 REQQR 461
             +QR
Sbjct: 467 DRRQR 471