Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  380 bits (976), Expect = e-110
 Identities = 223/534 (41%), Positives = 313/534 (58%), Gaps = 41/534 (7%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F  LGLSE +V  + A G+ +PTP+Q +AIP VL+  DL+  AQTGTGKT  F LP++E
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
           +L  +G     +R  PR  R LVL PTREL  Q+  + K++ +        + GGV +N 
Sbjct: 63  KLVADG-----RRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINK 117

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q + ++RGVD+LVA PGRLLDL  + +V L+    LVLDEAD+MLD+GF+HD++K+   +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLV 177

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASH-KRALL 240
           P  RQ LLFSAT  K I +LAG+ L +P ++EV+PP    +++EQ V  +P    K  +L
Sbjct: 178 PKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTIL 237

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
              +TA      L+F+RTKHGA +L ++LD  G  A +IHGNKSQ  R +AL  F+ GE+
Sbjct: 238 KQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEI 297

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATD+AARG+DI  + HV N++LP V + YVHRIGRT R GR G AI+  APDE +L
Sbjct: 298 RVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRL 357

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDV-RNPRNARGPRGDG-PNGSGGG 418
           L+ IE+          LMG   +    E P  + RP   R  R    PRG+G P G+G G
Sbjct: 358 LRDIEK----------LMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQPRGNGAG 407

Query: 419 GGRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDD 478
             +    +D+ + ++A+     G+   R+++  E    R  QR A    AD  P+     
Sbjct: 408 QRQGGPRRDRPQRQAAAGGFA-GDELLRDERSHE----RRDQRAAGHGPADGRPE----- 457

Query: 479 DIDNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQNGPRNSNG 532
                G+R         AQ    RPG   Q A  G+ +SG+  G  N P+ ++G
Sbjct: 458 -----GHR------NHKAQKHHGRPG--PQQARRGSEQSGERNGGGNRPQRADG 498



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 505 APAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPPAKRSGPRNGAPRDGQARRD------ 558
           APA  A     R G+  G+  G         G P    +G R G PR  + +R       
Sbjct: 376 APADQARPSKGRGGRGNGQPRG--------NGQPRGNGAGQRQGGPRRDRPQRQAAAGGF 427

Query: 559 --DTRPRRPAREDQPRQEPAVQNPRSNQPK--IMHKESKADRFPTPEQ 602
             D   R     ++  Q  A   P   +P+    HK  K    P P+Q
Sbjct: 428 AGDELLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQ 475