Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  319 bits (818), Expect = 1e-91
 Identities = 166/395 (42%), Positives = 248/395 (62%), Gaps = 5/395 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F S   +  ++ A+   GY   TP+Q+ AIP V +G+D++ +AQTGTGKT  FALPIL
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           ++L      D  +     + R L+L PTREL  Q+  + K YA+ L+     +FGG   +
Sbjct: 61  QKLL-----DTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTD 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            Q Q + +G D++VA PGRLL+    G++ L+ VE LVLDEADRMLDMGF+ D++K++  
Sbjct: 116 VQAQKLRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQA 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
              +RQ L+FSATFS  +  LA +++     +     NT    + Q V+ +    KR LL
Sbjct: 176 CNKERQTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELL 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           + LI    W++VLVF+ T+    +L E L+  G+P+  IH  K+Q  R +AL DF  G++
Sbjct: 236 SELIGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKI 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LV+T++AARGLDI  L +VVNF+LP + EDYVHR+GRTGRAG+SG AIS V+ +EE+ 
Sbjct: 296 RVLVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERT 355

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRER 395
           L  IE++  Q++    + G++ S  +    ++++R
Sbjct: 356 LADIEKLIGQRLKRIVMPGYEVSNRDLLLKQLQKR 390