Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  352 bits (904), Expect = e-101
 Identities = 217/576 (37%), Positives = 305/576 (52%), Gaps = 59/576 (10%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+FA LGLS   + AIE  GYT PTP+Q +AIP V  GRD++  AQTGTGKT  F LP++
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           + L        S +   R PR L+L PTRELA QV E+F +Y +  K   A + GG  MN
Sbjct: 61  DIL-------ASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMN 113

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            Q + + RGVDVL+A PGRL+DL  +GS+ L  V++LV+DEADRMLDMGF+ DV++++A 
Sbjct: 114 EQQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVAL 173

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP  RQ L FSAT  K+I  LA   L NP+ + + P     E +EQ +  + AS KR  L
Sbjct: 174 LPKIRQTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREAL 233

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
             L+         +F   K   + L + L  HG   +A+HG+  Q  RT+ L  FK  EV
Sbjct: 234 RQLLRRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEV 293

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           +++V +D+AARG+D+ ++ HV NF++P   EDY+HRIGRTGRAGR G A +L  P++ K 
Sbjct: 294 QLMVCSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKY 353

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           L++IE +  + I     +  + S +  E   +    D R P+              GG G
Sbjct: 354 LRAIENLLGKTIPPDPQL--ELSDVAVEDVALAVAEDDRRPKR-------------GGKG 398

Query: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI 480
           R ++G         +  +GRG   A   +P     A   Q P  R A ++   E      
Sbjct: 399 RPERG---------ARRSGRGSADAERPRPLAPERAANDQAPVERPAVEKTLAE------ 443

Query: 481 DNFGNRVDYVPQQKPAQ-GRGRRPGAPAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPP 539
                    V ++ P + G+  R         A  P S +   R +  R+S  +S     
Sbjct: 444 -------QPVAERPPVERGQAER--------TAERPSSDRTNERASSDRSSERAS----- 483

Query: 540 AKRSGPRNGAPRDGQARRDDTRPRRPAR-EDQPRQE 574
           ++R+G   G    G+  R   R RRP R ED P+ E
Sbjct: 484 SERNGDDRGRGGRGRDDRSAARGRRPRRWEDDPQSE 519



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 16/96 (16%)

Query: 541 KRSG---PRNGAPRDGQARRDDTRPR-----RPAREDQPRQEPAVQNPRSNQP------- 585
           KR G   P  GA R G+   D  RPR     R A +  P + PAV+   + QP       
Sbjct: 393 KRGGKGRPERGARRSGRGSADAERPRPLAPERAANDQAPVERPAVEKTLAEQPVAERPPV 452

Query: 586 KIMHKESKADRFPTPEQLDQLPSRPRGEKPALLTRN 621
           +    E  A+R P+ ++ ++  S  R  + A   RN
Sbjct: 453 ERGQAERTAER-PSSDRTNERASSDRSSERASSERN 487