Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 393 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  357 bits (917), Expect = e-103
 Identities = 194/372 (52%), Positives = 253/372 (68%), Gaps = 7/372 (1%)

Query: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           FASL L E L  A+ A GYT  TP+Q  AIP  L GRD++  AQTGTGKT  F LP+L+R
Sbjct: 4   FASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQR 63

Query: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSA-CIFGGVGMNP 121
           L  +  P       P +PR L+LTPTRELA Q+ ES     R L  +    + GGV +  
Sbjct: 64  LTKDPQP-----RVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILR 118

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q + + RG+++LVA PGRL DL  + +VDL  +E+LVLDEADRMLDMGF   VKK+ A L
Sbjct: 119 QTRMVQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVL 178

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLA 241
           P KRQ ++FSAT   ++T L   L+++P R+EV P  +   RI+QRV  +  ++KR LL 
Sbjct: 179 PRKRQTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLL 238

Query: 242 HLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
            L+  A   E+ +VFTRTKHGAN+L  +L ++G+ +  IHGNKSQ AR +AL DFK+G+V
Sbjct: 239 DLLGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKV 298

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVATDIAARG+D+D + HV+NF+LPN  E YVHRIGRT RAG +G A+SL AP E   
Sbjct: 299 RALVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPY 358

Query: 361 LKSIERMTKQKI 372
           LK+IE++ K +I
Sbjct: 359 LKAIEKVIKSRI 370