Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  358 bits (918), Expect = e-103
 Identities = 200/461 (43%), Positives = 277/461 (60%), Gaps = 26/461 (5%)

Query: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           F+++GL E L+  I   GYT PTP+Q RAIP  L G+D++  AQTGTGKT  F +P++ +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQ 122
           +   G     ++   +  R LVL PTRELA Q+  + K         +  + GGV +NPQ
Sbjct: 69  MMQYG-----RKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQ 123

Query: 123 VQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182
           +  +SRG D+L+A PGRLLD+  +G++DL   + LVLDEAD+MLD+GF+H ++K+ A LP
Sbjct: 124 ISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLP 183

Query: 183 AKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAH 242
            +RQ +LFSAT  K + ++A   L +P RIEV PP    ++I Q V  +  + K +LL  
Sbjct: 184 EQRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKE 243

Query: 243 LITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRI 302
           L+ A   E+ LVF RTKHG  +L + L   G  A AIHGNKSQ  R +ALA FK+GEV+I
Sbjct: 244 LLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKI 303

Query: 303 LVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLK 362
           LVATD+AARGLDI  + +V N+ELPNV + YVHRIGRT RAG+ G+A++  APDE   LK
Sbjct: 304 LVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELK 363

Query: 363 SIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGG--GGG 420
           +I++           M  +         EV   PD + P    G RG G  G GG  GG 
Sbjct: 364 AIQK----------TMNLNIPVASGRPWEV--LPDAKAP---AGRRGGGKPGGGGKPGGH 408

Query: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQR 461
           R+ +    G  +  + S G+G      Q   +G P  +++R
Sbjct: 409 RRRRSGGGGGGQGGARSGGQG----AGQGGGQGKPGGQRRR 445