Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  347 bits (889), Expect = e-100
 Identities = 189/432 (43%), Positives = 273/432 (63%), Gaps = 5/432 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F S   +  ++ AI   GY + TP+Q+ AIPA+ +G+D++ +AQTGTGKT  FALPIL
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           +++F +  P  +QR   R    L+L PTREL AQV ++ K Y+R L      ++GGV M+
Sbjct: 61  QKMFDS--PSDTQRSNTR---ALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMD 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            Q   + +G D++VA PGRLL+     +++LS+V+ LVLDEADRMLDMGF+ D++K+L +
Sbjct: 116 TQAAKVKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQ 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           +   RQNLLFSATFS  +  LA ++L  P+ I V   NTT   + Q V+ +    KR LL
Sbjct: 176 VNRDRQNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELL 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           + LI    W+QVLVFT T+  A+ L + L+  G+P+  +H  K+Q  R +AL +FK G+V
Sbjct: 236 SELIGKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKV 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVAT++AARGLDI +L +VVNF+LP + EDYVHRIGRTGRAGR+G AISLV+ +EE+ 
Sbjct: 296 RALVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERT 355

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           L  IE++   KI    + G++  + +    ++++R      +      G         G 
Sbjct: 356 LADIEKLIGNKIRRITIPGYEVGSRDLLIKQLQKRRSFAKKQQRSDNVGAQVIAEKNMGA 415

Query: 421 RKDKGKDKGKEK 432
           R+ K K+    K
Sbjct: 416 RRVKVKNSSNAK 427