Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  459 bits (1180), Expect = e-133
 Identities = 254/489 (51%), Positives = 323/489 (66%), Gaps = 33/489 (6%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  ++ A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           E L       +  R   +Q R LVLTPTRELAAQ+ ES   Y + L   SA +FGGVG++
Sbjct: 61  ELL------SQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGIS 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + RGVD+LVA PGRLLDL  Q +V  S +E LVLDEADRMLDMGF+HD+KK+LA 
Sbjct: 115 PQISQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAI 174

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP KRQNL+FSATFS +I  LA  L++NP  I VTP N+T   ++Q +  +  + K A L
Sbjct: 175 LPPKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAAL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
             LI  G W+QVLVF+RTKHGANRLA++L+  G+ A AIHGNKSQ ARTKALA+FK+G+V
Sbjct: 235 VKLIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG  G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354

Query: 361 LKSIERMTKQKIADGDLMGFDAS-TIEAEKPEVRERPDVRNPRNARGP------------ 407
           L  IER+  + +   ++ GF+ + T+       +     + PRN +              
Sbjct: 355 LADIERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSN 414

Query: 408 -----------RGDGPNGSGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREG-TP 455
                      RGD   G+  G GR+  G   G  K A  S G+  +   +Q+ R+G  P
Sbjct: 415 GQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPA--SEGQQAQNQGKQEHRDGNAP 472

Query: 456 AREQQRPAP 464
           AR ++R  P
Sbjct: 473 ARRRRRRRP 481



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 520 PQGRQNGPRNSNGSSTGTPPAKRSGPRNG----APRDGQARR---DDTRPRRPAREDQPR 572
           P+ + N  R+SN SS G    K   PR G      ++GQ RR     T   +PA E Q  
Sbjct: 399 PKPKSNSQRSSNRSSNGQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQA 458

Query: 573 QEPAVQNPRSNQPKIMHKESKADRFPTPE 601
           Q    Q  R        +  +     TP+
Sbjct: 459 QNQGKQEHRDGNAPARRRRRRRPSQGTPK 487