Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  369 bits (946), Expect = e-106
 Identities = 198/382 (51%), Positives = 254/382 (66%), Gaps = 4/382 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGL+  ++ A+   GY + TP+QQ+AIP VLQG+DL   AQTGTGKT  F LP++
Sbjct: 1   MRFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLI 60

Query: 61  ERLFPNGHPDKSQRHGPRQP-RVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGM 119
           +RL    H D +     + P R L+L PTRELA QV+ES K Y +   F S C+FGGV +
Sbjct: 61  QRLL---HLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDI 117

Query: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
            PQ+  M +GV+ +VA PGRLLD   Q SV  + V+ LVLDEADRMLDMGF+ D++++L 
Sbjct: 118 KPQIAEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILN 177

Query: 180 RLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRAL 239
            LP  RQ+LLFSATFS +I  LA  +L +P  +EV   N   + I  RV  +  + K+ L
Sbjct: 178 MLPKTRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDL 237

Query: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGE 299
           L  L+ +G   Q LVF RTK G  RLA  L++ G+ A +IHG+KSQN R KAL  FK G 
Sbjct: 238 LIKLLRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGG 297

Query: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359
            ++LVATD+AARGLDID LP+V+NFELP+  EDYVHRIGRTGRAGR G AISLV   E  
Sbjct: 298 CKVLVATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVG 357

Query: 360 LLKSIERMTKQKIADGDLMGFD 381
            L  IE++ K +I    + GF+
Sbjct: 358 YLADIEKLIKMQIEQVAVAGFE 379