Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  456 bits (1172), Expect = e-132
 Identities = 248/471 (52%), Positives = 307/471 (65%), Gaps = 18/471 (3%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGL   ++ AI   GYT+PTP+QQ+AIPAVL GRDLM  AQTGTGKT GF LPIL
Sbjct: 1   MLFTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           + L      +       R+PRVL+L PTRELA QV ES + Y + L   S  +FGGVGMN
Sbjct: 61  QLLSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMN 120

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+ A+ RGVD+LVACPGRLLD   Q ++DLS +EILVLDEADRMLDMGF+ D++K+LA 
Sbjct: 121 PQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILAL 180

Query: 181 LP--AKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRA 238
           LP   KRQNLLFSATFS +I +LA   LH+P+ IEV   NTTVE + Q+V  +    K+ 
Sbjct: 181 LPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKD 240

Query: 239 LLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAG 298
           +L HL     W QVL+FTRTKHGA+ L+  LDK G+ + A+HGNK+Q AR +AL +FK G
Sbjct: 241 VLLHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEG 300

Query: 299 EVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
           ++  LVATDIAARG+DIDQLP+VVN+ELPNV EDYVHRIGRTGRAG  GEAISLV  DE 
Sbjct: 301 KLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDER 360

Query: 359 KLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVR-------------ERPDVRNPRNAR 405
             L+SIER+ K+ +    L GF+ S      P                +R     P  + 
Sbjct: 361 DNLRSIERLIKKDLEKEVLPGFEPSANPTPAPPQNRGGQRQGQGQRQGQRQGQGQPGRSF 420

Query: 406 GPRGDG--PNGSGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREGT 454
           G  G G    G+GG GGR   G+ + +    + ++G G  P      R GT
Sbjct: 421 GNNGGGNRSGGNGGSGGRGQGGEGRSRSGGGA-ASGNGGTPRSGGNHRNGT 470