Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  385 bits (988), Expect = e-111
 Identities = 221/450 (49%), Positives = 278/450 (61%), Gaps = 17/450 (3%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+FA L L   L+ A++  GY  PTPVQ++AIPAVL G DLM AAQTGTGKT  FALP+L
Sbjct: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           +RL  +  P  S        R L+L PTRELA QV +SF  Y + L   S  ++GGV +N
Sbjct: 61  QRLAHDPEPTASN-----STRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSIN 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + +GVD+LVA PGRLLDL  Q +V    V  LVLDEADRMLD+GF  ++  + A 
Sbjct: 116 PQMMKLRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFAL 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP +RQ LLFSATFS  I  +A +LL  P  IE   PN T   I+Q V  +    K AL 
Sbjct: 176 LPKQRQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALF 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
            HL     W+QVLVF +T+ G + L E L   G+ A +IHG+K Q AR +AL  FKAG+V
Sbjct: 236 CHLYKHKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQV 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATD+A+RGLDID LP VVNF+LP V EDYVHRIGRT RAG SGEA+SLV  DE  L
Sbjct: 296 RVLVATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNL 355

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAE---------KPEVRERPDVRNPRNARGP-RGD 410
           L +IE +  Q ++  +  GF+      E         KP+  + P   +     GP RG 
Sbjct: 356 LGAIEVLIGQPLSRIEQHGFEPDHRVPETGPAGQVIKKPKKPKMPKHLDYGIGSGPSRGK 415

Query: 411 GPNGSGGGGGRKDKGKDKGKEKSASNSNGR 440
           GP  +   GGR+  G+  G  K+A  + GR
Sbjct: 416 GPGSAKAPGGRRGAGRPGG--KAAPKARGR 443