Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  340 bits (872), Expect = 8e-98
 Identities = 176/381 (46%), Positives = 246/381 (64%), Gaps = 6/381 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F+ LGL  ALV A+   GY  PTP+Q +AIP++L G++++ AAQTGTGKT  F LP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
            R         + +  P++ R ++LTPTRELA QV ++   YA+ L   +  ++GGV   
Sbjct: 61  HRFAD------APKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAA 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ + +  GVD+LVA PGRLLD+  Q ++    V +LVLDEADRMLDMGF+ D+  ++ +
Sbjct: 115 PQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEK 174

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP +RQNLLFSAT SK +  LA   + +   IE++  N    +I+Q +  +    K ALL
Sbjct: 175 LPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           +HLI    W Q L+F +TKHGA +L   L+K G+ A A H  +SQ  R + L DFKAG+V
Sbjct: 235 SHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
             LVAT + +RG+DID L  V+N++LP+  +DY+HRIGRTGRAG  GEAIS V+ D+ + 
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354

Query: 361 LKSIERMTKQKIADGDLMGFD 381
           L +IER     I   ++ GF+
Sbjct: 355 LCAIERRLGHIIERKNIEGFE 375