Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  351 bits (900), Expect = e-101
 Identities = 185/384 (48%), Positives = 260/384 (67%), Gaps = 5/384 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F S      ++ AI   GY + TP+QQ+AIPA+ +G+D++ +AQTGTGKT  FALPIL
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           +++  N  P ++ +   R   VL+LTPTRELAAQV E+ + Y++ L F    I+GGV + 
Sbjct: 61  QKMVEN--PSETLKSNTR---VLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVE 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            Q Q + RG D++VA PGRLL+     ++ LS V+ LVLDEADRMLDMGF  D++K+L  
Sbjct: 116 TQAQKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQA 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           +  KRQNLLFSATFS  +  LA +++  P+ I     NTT + + Q V+ +    KR LL
Sbjct: 176 VNKKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELL 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           + LI    W+QVLVFT T+  A+ L + L+  G+P+  +HG K+Q +R +AL +F +G+V
Sbjct: 236 SELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKV 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVAT++AARGLDI  L +VVNF+LP + EDYVHRIGRTGRAG+SG AIS V+ +EE+ 
Sbjct: 296 RVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERT 355

Query: 361 LKSIERMTKQKIADGDLMGFDAST 384
           L  IE++  QKI    + G++  +
Sbjct: 356 LADIEKLIGQKIRRITVPGYEVGS 379