Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  317 bits (813), Expect = 6e-91
 Identities = 180/414 (43%), Positives = 241/414 (58%), Gaps = 18/414 (4%)

Query: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           F+ L L   ++ AI  AGY  PTP+Q  AIP  L+GRD++  AQTGTGKT  F LP++  
Sbjct: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQ 122
           L       +  R   R PR LVL PTRELAAQV E+F +YA+  K   A + GGV    Q
Sbjct: 64  L-------RKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQ 116

Query: 123 VQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182
              + +GVDVL+A PGRLLD   +G + L+ V+++V+DEADRMLDMGF+ D++K+    P
Sbjct: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTP 176

Query: 183 AKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAS-------- 234
             RQ L FSAT + +I  +    L NP R+EV   +TT E I Q + +   S        
Sbjct: 177 FTRQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAF 236

Query: 235 -HKRALLAHLI--TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKA 291
             KR +L  LI          ++F   K   + +A+ L KHG  A  IHG+  Q+ RTK 
Sbjct: 237 KEKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKT 296

Query: 292 LADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAIS 351
           L  F+ G ++ LVA+D+AARGLDI  + HV NF++P+  EDYVHRIGRTGRAGR G  + 
Sbjct: 297 LDQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLM 356

Query: 352 LVAPDEEKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNAR 405
           L  P ++KLL +IE + K +I   +  G  A      K E R  P+ R  R+ R
Sbjct: 357 LAVPADDKLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERPEPEKRERRSRR 410