Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella loihica PV-4

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 27  ERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRR 86
           + K+   + + V NQ D  D+ Q  +++A+R    F+G +   TWL  IA+N  +NH   
Sbjct: 30  QSKVINLIARYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAKNHLVA 89

Query: 87  FYAQPPLSTFD--ESEFSESSDDIDLSELCDNRRLLDRTLL------AMDELPKDMRDTL 138
              + P +  D  E+E+ + SD   L E     RL+    +       +D LP++++  +
Sbjct: 90  QGRRAPANDVDAEEAEYYDGSD--ALKEFASPERLMLSDEIQKVVFDTLDTLPEELKMAI 147

Query: 139 WTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKRSV 177
                   SY + A  +  P+GTVRSR+FRARE + + +
Sbjct: 148 SLRELDGMSYEEIANVMECPVGTVRSRIFRAREAIDKKL 186