Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 4e-17
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 27  ERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRR 86
           + K+   + + V NQ D  D+ Q  +++A+R    F+G +   TWL  IA+N  +N+   
Sbjct: 30  QSKVISLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAKNYLVS 89

Query: 87  FYAQPPLSTFD--ESEFSESSDDIDLSELCDNRRLL------DRTLLAMDELPKDMRDTL 138
              + P +  D  ++E+ E SD   L E     RL+            ++ LP+++R  +
Sbjct: 90  QGRRAPANDVDAEDAEYYEGSD--ALKEFASPERLMLSDEIKKVVFETLETLPEELRMAI 147

Query: 139 WTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKRSV 177
                   SY D A  +  P+GTVRSR+FRARE + + +
Sbjct: 148 SLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKKL 186