Pairwise Alignments

Query, 466 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Pseudomonas fluorescens FW300-N2E2

Subject, 461 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (461), Expect = 3e-50
 Identities = 124/440 (28%), Positives = 210/440 (47%), Gaps = 11/440 (2%)

Query: 14  LLRLAGPLIASQLAHMLMVLTDTVMMARLSPEALAGGGLGAATYSFVSIFCIGVIAAVGT 73
           L+ LA P++ +Q+   +M   DTVM  R+S   +A   +G + +    +F  G++ A   
Sbjct: 11  LVHLALPVLIAQVTQTMMGFIDTVMAGRVSALDMAAVAIGGSLWLPALLFVQGLLVAFTP 70

Query: 74  LVAIRQGAGDVEGATRLTQAGLWLAWL-MALMAGLLLWNLKPVLLMFGQTETNVLSAGQF 132
           + A   GA +      +     ++A +  A++  +LL+  +   LM    E   LS   +
Sbjct: 71  VFASHHGADNQNAIRPMAFQAAYIAIIGAAVVISILLFAPQIFKLMDLSPELAELSVS-Y 129

Query: 133 LLALPFALPGYLSFMALRGFTSAIGRATPVMVISLGGTVANFLLNYALITGMFGLPKLGL 192
           L    + +P ++ +  LRG +  I    P MVI   G   N   NY  I G  G P LG 
Sbjct: 130 LHGFAWGVPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHLGAPALGG 189

Query: 193 MGIGLVTAIVANCMALALAWHIHRHPAYRAYPLLEGLSRPNRQYLKELWRLGLPIGGTYA 252
            G G+ TA+V   M +A+  ++  H  +     L     P+ + +K + + G+PI     
Sbjct: 190 AGCGIATALVFWAMFIAMTIYMQWHKRFAVIKPLGAFHLPDLKTMKRMTKHGMPIAMALF 249

Query: 253 VEVGLFAFAALCMGTMGSTSLAAHQIALQIVSVAFMVPAGMSYAITMRIGQHYGAGQLLM 312
            EV LFA  AL +  +G+  +A HQIAL   S+ FM+P  +  A+++R+G + G  +  +
Sbjct: 250 FEVSLFAIIALLLAPLGADVVAGHQIALNFSSIVFMLPLSIGIAVSIRVGYYLGQYKADV 309

Query: 313 ARLAGRVGIGFGAAAMLAFAMVFWLLPHQLVGLFLDHDDPAFRDVINLAVSLLAVAAWFE 372
           A+L  +VG+    +     A++  +   Q+  L+  + +P   +V+ LA SL+ +AA ++
Sbjct: 310 AKLVTKVGLAIAFSLAACTAVITVVFRTQIALLY--NQNP---EVVALASSLMFLAALYQ 364

Query: 373 LFDGTQTIAMGCIRGLKDAKTTFLVGLGCYWLIGAPAAWWMA----FHLNWGPTGVWWGL 428
           L D  Q +  G +RG  D ++ F + L  YW IG    + +A         G  G W GL
Sbjct: 365 LSDSVQVVTAGALRGYHDTRSAFYITLVSYWAIGMVLGYLLAETDILVPAMGAHGFWIGL 424

Query: 429 ALGLACAAVSLTAAFEWKMK 448
             GL  AA+      ++  K
Sbjct: 425 IAGLTSAALLFALRLQYIQK 444