Pairwise Alignments

Query, 1147 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1311 a.a., type VI secretion system membrane subunit TssM from Ralstonia solanacearum IBSBF1503

 Score =  193 bits (490), Expect = 9e-53
 Identities = 159/537 (29%), Positives = 246/537 (45%), Gaps = 48/537 (8%)

Query: 53  LTVSVLLLGWGLAMVFVSGRGGSSTNLQQNAPEQARALHLARIEDEQRE-VRSRFKQALS 111
           + +  LL+ W  + ++   R   ++   + A EQ+     A  + E+ E +R R  +A+ 
Sbjct: 42  IALGALLVLWLASALWKRWRARRASARLEGALEQSADKSSAPDKREEVEALRVRLAEAVK 101

Query: 112 TLRSSSLYPGRSERWRNDLPWYLMIGPPASGKTRLLDRSGLEFPLNKLERKPIGDTSGTR 171
           T++ S L     +    +LPWY++IG PA+GK+  +  SGL+FP        I    GTR
Sbjct: 102 TIKRSKLGQLSGDAALYELPWYIVIGNPAAGKSTAVLNSGLQFPFADKGGAVIQGIGGTR 161

Query: 172 YCDWYFAEHAVLVDTAGRYLTQTDSDVDSSVWAVLLELLRKRRRSRPLNGVLVTVPTEVL 231
            CDW+F    +L+DTAGRY    +   D   W   L+LL++ R   P+NG++VTV    L
Sbjct: 162 NCDWFFTTEGILLDTAGRYSVHEE---DRREWLGFLDLLKRYRPKAPINGIVVTVSVSEL 218

Query: 232 LLGSEDEVTTLARQIRGRLQELQQRLHVDVPVYLVLSKADNVPGFNEFFDSLTREENDQV 291
                +    LA+ +R R+QEL +RL V  PVY++ +KAD + GF EFF    ++E D+V
Sbjct: 219 TQNRPEFAINLAKNLRQRVQELTERLEVFAPVYVMFTKADLITGFTEFFGDSEKQERDRV 278

Query: 292 LGAS--FSRDQRGCDVAVLRAEFEALLHRLN----SQVIMRMHQERDPLRRSCMLDFPHQ 345
            GAS  F  D +    A+    F+ L   L     +Q+ +    +  P   S  L+F   
Sbjct: 279 WGASLPFEPDAKPDVAALFDQRFDELCDGLKEISVAQIALHQKNKLSPGLLSFPLEFASI 338

Query: 346 LGQLGTSLCLLVEQAFTGSVGTLRGFYLTSASSSGRTNTAP--------------GGRSR 391
              L + L  L ++         RGFY TSA   G TN+A                 RSR
Sbjct: 339 KPALRSFLVTLFDENPFQYKPVFRGFYFTSALQEGATNSASAERIARRFGLSTDGAARSR 398

Query: 392 --------FIKHLISRVIFPEA-DLTDLVQRERRRLHWGQRVMYFGALTVIGLCGLLWAH 442
                   F++ L S+VIF +   +       + RL   +   +FG +  +GL    W  
Sbjct: 399 EVFSKNGFFLRDLFSKVIFSDRHTVRQFASPAKTRL---RIATFFGLVLALGLLLGGWTW 455

Query: 443 GFSANHERLDSLRTLTQR----WDQQQSVQANADDWTSMLESLDIRFEATQVFPPYRAV- 497
            +  N       RTLT       D+   +Q N  D  + LE+LDI  +  +    +R   
Sbjct: 456 SYMGN-------RTLTANVQADLDKIVKLQQNRVDLQARLEALDILQDRIEQLERFRGEH 508

Query: 498 PLHERVGLYQGEASNPAVTNAYERDLQGRLLPKVAQRLEAHVRNNWNDREQLLNSLR 554
           PL   +GLYQG+A    + + Y   L+  +L  V   LE  + +     +QL   +R
Sbjct: 509 PLALSLGLYQGDALQHKLLDEYYNGLRQVMLKPVGGALETFLADVNAHPDQLAPMVR 565



 Score = 57.8 bits (138), Expect = 6e-12
 Identities = 125/617 (20%), Positives = 225/617 (36%), Gaps = 107/617 (17%)

Query: 551  NSLRAYLMLGLQERRDVAWLKD--------WLA-NDGSL-RYPGNTALQEGLNAHLERLL 600
            N+L+ YLML  +   +VA L D        WL  N G++ R     + +  L+  L R+ 
Sbjct: 622  NALKTYLMLSDKRHVEVAHLTDQITRFWRGWLEDNRGNMPREQMIRSAERNLSFFLARVN 681

Query: 601  E--LPFIHALNEPLVAQAREALRR----ESLATVVYRMLHEQAS-HLPQYRLSQHLGSQG 653
            +   P +   N  L+ Q RE LRR           Y  +  +AS       +++ +G  G
Sbjct: 682  DDNWPLLEG-NLSLIDQTRENLRRVVRGMPARERAYAEIKARASTRYAPMTVARIVGETG 740

Query: 654  ALLVGTDRVIPGFYTRQGYERYFSVQGA---ALVTELLRDNWVLGEGEGLSRMDM----- 705
            + ++     +PG +T++ ++ Y  VQGA   A   EL   +WVL      +R D+     
Sbjct: 741  SNVIAGSYAVPGTFTKEAWQGY--VQGAIREAASKELQTKDWVLNVA---ARDDLTLEGS 795

Query: 706  -RRLMVELEQLYFRDYADHWSEAVGQVALQTISNAGEGAEQLAGL-TSAHSPILRMLVQV 763
              ++   L  +Y  +YA  W   +  VA+Q  S   +    +  L    +SPI ++L   
Sbjct: 796  PEQIQKTLVTMYKTEYAHEWQRFMQGVAIQDFSGFDQAVAGMNLLGDPTNSPIRKVLDTA 855

Query: 764  RDHTRIQ--------------------------AVAEQIDDLTRAAGNAGHAVTKLSAVA 797
             D T                                 QI+      GNA      +  V 
Sbjct: 856  YDQTSWDNPSMFNAGLKQAKSGTLGWFKQLFSWQTPSQINVNVDVGGNADAGTLPMGPV- 914

Query: 798  GKASASLAENLPDTAQKSLRRRFEPLHRLLDPDNGPTADLVQALRAVDEVQLQLANLARA 857
            GK  A LA  +     +SL R +                    + A+ +V+ +   +   
Sbjct: 915  GKEFAGLARVVMVRDDRSLLRGY--------------------MDALSKVRTRFNLIKNQ 954

Query: 858  SAPEQAAFELARHRMGGQRDALSH---------LRGASARLPRPLSAWFNVMAEDSWRLV 908
              P   A +L +  + G    L+          L G +    + L          S+ +V
Sbjct: 955  GDPGPGARQLMQQTLDGNGSELADTLKYVDEQMLTGMTDSERQTLRPLLVRPLLQSYAVV 1014

Query: 909  LNDSYRYLNQRYQSELYSFYGKAINKRYPFSAHSASDVALNDFREFFKDQGIVDRFFDNY 968
            +  +   +N+ + +++Y  + + +  +YPF+A++  + +  +  + F  +G + +F +  
Sbjct: 1015 VRPASVEINKVWNAQVYQPFSQTLADKYPFAANAKIEASAAEIGQIFGPEGAIAKFANTT 1074

Query: 969  LQPFISGSAGHYRLRSIEGQSLPMSRVYLDQMATAHT---------IRRSFFAENPTEPQ 1019
            + P +S   G        G    +   ++ +  +  T                     PQ
Sbjct: 1075 IGP-LSVRRGDMLAARTWGD---LGLAFVPEFTSGFTRWIAPLTGGAAGGAGGAAAAAPQ 1130

Query: 1020 VQFKLEPYTLDPAVSRAEF--RFGDQMLEYRHGPILPVAFTWPSDAQNGRTALVLDKMVG 1077
              F++ P    P+    E+      Q L YR+ P     F WP+        +      G
Sbjct: 1131 TVFQILPV---PSQGTTEYTIEIDGQQLRYRNTPPQWANFVWPNPQGAPGARVSATTFDG 1187

Query: 1078 RGVGIEKNTGPWSLFRL 1094
            R V +    G + L RL
Sbjct: 1188 RTVELLNEPGRFGLERL 1204