Pairwise Alignments

Query, 1147 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1266 a.a., type VI secretion protein VasK from Herbaspirillum seropedicae SmR1

 Score =  226 bits (576), Expect = 9e-63
 Identities = 278/1212 (22%), Positives = 479/1212 (39%), Gaps = 160/1212 (13%)

Query: 15   TWIWTLLAVLCIALLVWFAGPLLAVNDYKFWASPTARLLTVSVLLLGWGLAMVFVSGRGG 74
            T + TLL  + +A +++     L +       +P    +    LLL W     +   +  
Sbjct: 11   TRVLTLLGFMALAAVLFIGAEQLEL-------APIWPAVLFCALLLAWLALRRYQRWKAQ 63

Query: 75   SSTNLQQNAPEQARALHL-----ARIEDEQREVRSRFKQALSTLRSSSLYPGRSERWRND 129
             +    +N  EQ  A  L     A   D+   +R R  +A++T+++S L          +
Sbjct: 64   RAATKLENVLEQQAAQPLPVDSEAARHDDVAALRQRMLEAINTIKTSKLGQKSGAAALYE 123

Query: 130  LPWYLMIGPPASGKTRLLDRSGLEFPLNKLERKPIGDTSGTRYCDWYFAEHAVLVDTAGR 189
            LPWY++IG PA+GK+  +  SGL+FP      K +    GTR CDW+F    +L+DTAGR
Sbjct: 124  LPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDTAGR 183

Query: 190  YLTQTDSDVDSSVWAVLLELLRKRRRSRPLNGVLVTVPTEVLLLGSEDEVTTLARQIRGR 249
            Y    +   D   W   L LL++ R+  P+NG+++ V    L     +    LA+ +R R
Sbjct: 184  YSVYEE---DRREWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240

Query: 250  LQELQQRLHVDVPVYLVLSKADNVPGFNEFFDSLTREENDQVLGASFSRDQR--GCDVAV 307
            +QEL ++L V  PVY+V +K D + GFNEFF    R E D+V GA+ + D++  G +V+ 
Sbjct: 241  VQELTEKLEVFAPVYVVFTKTDLITGFNEFFLDSERGERDRVWGATLAYDRKHSGQEVSN 300

Query: 308  LRAE-FEALLHRLNSQVIMRMHQERDPLRRSCMLDFPHQL----GQLGTSLCLLVEQAFT 362
               E F+ L   L    +  M  +R       +L FP +     G L + +  L E+   
Sbjct: 301  FFDERFDELYAGLKEMSLANMAVKRGENLAPGVLTFPLEFSAFKGVLRSFVTTLFEENPF 360

Query: 363  GSVGTLRGFYLTSASSSGRTNTAPGGR---------------------SRFIKHLISRVI 401
                  RGFY TSA   G T  A   R                       F+ +L  +VI
Sbjct: 361  QFKPVFRGFYFTSALQEGATLGASAQRIADRFGLTLEDQPQREVLSKQGFFLHNLFKQVI 420

Query: 402  FPEADL-TDLVQRERRRLHWGQRVMYFGALTVIGLCGLLWAHGFSANHERLDSLRTLTQR 460
            F +  L      R + R+ +   + +F AL ++G     W+  +  N + + +++     
Sbjct: 421  FADKQLVAQYTSRNKIRMRY---LTFFAALAMLGALLGGWSWSYMGNRQLVANVQA---D 474

Query: 461  WDQQQSVQANADDWTSMLESLDIRFEATQVFPPYRA-VPLHERVGLYQGEASNPAVTNAY 519
             D+   +Q    D  S  E+L+I  +  +    YR+  P+   +GLYQG+     +   Y
Sbjct: 475  MDKAIKLQEKRLDLQSRFEALEILQDRIEQLDRYRSHRPVSIDLGLYQGDLLERKLREEY 534

Query: 520  ERDLQGRLLPKVAQRLEAH-VRNNWNDR-------------------------------- 546
               ++  +L  VA  +E + +  N N                                  
Sbjct: 535  FAGIKEIMLKPVASSIENYLIEVNANSSKLEPMSRPPQADSLATTGDNNIHAGNALRTYK 594

Query: 547  -------EQLLNSLRAYLMLGLQERRDVAWLKDWLAN--DGSLRYPGNTALQEGLNAHLE 597
                   E   N+L+ YLML  + R + + L D +     G L     T  +E +    E
Sbjct: 595  DSSATNVEDAYNALKTYLMLSDKSRAEASHLNDQITRFWRGWLETNRGTMPREQMIRSAE 654

Query: 598  RLLELPFIHALNEP----------LVAQAREALRR-----ESLATVVYRMLHEQASHLPQ 642
            RL+    +  +++P          LV Q RE LR       +   V   +    A+    
Sbjct: 655  RLISFS-LEQIDDPSWPTTENKLTLVDQTRENLRHVVRGMPARERVYADVKARAATRFAS 713

Query: 643  YRLSQHLGSQGALLVGTDRVIPGFYTRQGYERYFSVQGA---ALVTELLRDNWVLGEGEG 699
              +++ +G +   LV     IPG +TR  +E++  V+ A   A   EL   +WVL   + 
Sbjct: 714  MTVARIVGDKDRELVMGSYAIPGTFTRNAWEKF--VEDAFKEAANKELQSADWVL---KT 768

Query: 700  LSRMDM------RRLMVELEQLYFRDYADHWSEAVGQVALQTISNAGEGAEQLAGL-TSA 752
             S+ D+       ++   L   Y  +YA  W + +  V++  + N  +    +  L    
Sbjct: 769  SSKEDLTLEGSPEQIQKALVSQYKSEYAREWQKFLQGVSIVELHNLDDATNAMNRLGDPL 828

Query: 753  HSPILRMLVQVRDHT---RIQAVAEQIDDLTRA-AGNAGHAVTKLSAVAGKASASL-AEN 807
             SPI +++  V D T       +   +   +R  +G     V + S     A   L  + 
Sbjct: 829  TSPINKVISTVYDETSWDNPSLIGSGLATASRGLSGWFKETVLRRSPAPPPAPPQLNTDG 888

Query: 808  LPDTAQKSLRRRFEPLHRLLDPDNGPTADLVQALRAVDEVQLQLANLARASAPEQAAFEL 867
                    + R F  + RL+   +   + +   +  + +++ +L  +         A +L
Sbjct: 889  GAAIPMGPVAREFAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQL 948

Query: 868  ARHRMGGQRDALSH---------LRGASAR--------LPRPLSAWFNVMAEDSWRLVLN 910
             +  + G    LS          L G + +        L RPL   FN +        ++
Sbjct: 949  MQQTLDGSGSELSDALKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNAL--------VH 1000

Query: 911  DSYRYLNQRYQSELYSFYGKAINKRYPFSAHSASDVALNDFREFFKDQGIVDRFFDNYLQ 970
             +   LN+ +++++Y  +   +  +YPFS  S  +    +    F + G + +F    + 
Sbjct: 1001 PTEGELNKIWRAQVYEPFQNNLATKYPFSPSSKIEANSGEINTVFGESGAISKFVTTAMG 1060

Query: 971  PFISGSAGHYRLRSIEGQSLPMSRVYLDQMATAHTIRRSFFAENPT-EPQVQFKLEPYTL 1029
            P +         R      + +S       A   +   S  A     + Q  F+++P   
Sbjct: 1061 PLVVRRGDTLSPRKWADMGITLSPAITTSFADWISTHGSTGAGGGAGDAQTVFQIQP--- 1117

Query: 1030 DPAVSRAEF--RFGDQMLEYRHGPILPVAFTWPSDAQNGRTALVLDKMVGRGVGIEKNTG 1087
             PA    E+      Q L YR+     V F WP+   +    +      GR V +    G
Sbjct: 1118 QPAPGALEYTIEIDGQQLRYRNTQAQWVNFVWPNPQGSPGARVTAVTYDGRTVEVASQPG 1177

Query: 1088 PWSLFRLFDLMQ 1099
             + L RL +  Q
Sbjct: 1178 RFGLERLINTAQ 1189