Pairwise Alignments

Query, 382 a.a., ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A from Pseudomonas fluorescens FW300-N2E2

Subject, 261 a.a., conserved hypothetical protein TIGR00056 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (313), Expect = 2e-33
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 157 PRRWRMTPMVVH-IEQTGLDAAPIVALLTFLVGAVVAFLGATVLADFGASIFTVDLVAFS 215
           PR  +  P++V  I   G+ +  I+ +    +G V+A  G  +L  FG       +VA S
Sbjct: 36  PRVRKGFPLLVRQIYVVGVQSMVIIVVSGLFIGMVLALQGYNILVGFGTEESLGPMVALS 95

Query: 216 FLREFGVLLTAILMAGRTASAFTAQIGSMKANEEIDAIRTLGLDPVELLVIPRVLALLVA 275
            LRE G ++TA+L AGR  SA TA+IG MK+ E++ ++  + +DP+  ++ PR  A +++
Sbjct: 96  LLRELGPVVTALLFAGRAGSALTAEIGLMKSTEQLSSLEMMAIDPLRQIIAPRFWAGVIS 155

Query: 276 LPMLTFLAMLSGIIGGGVVCALSLGISPAMFLTLLQSDIGVQHFLVG-MVKAPIFAFLIA 334
           +P+L  +    GI GG +V     GI    F ++LQ+ +  +  +V  ++K+ +FA ++ 
Sbjct: 156 MPLLALMFTAVGIYGGHLVGVEWKGIDSGAFWSILQASVEWRQDIVNCLIKSGVFAVVVT 215

Query: 335 AVGCLEGFKVSGSAESVGAHTTSSVVQSIFVVIVLD-AVAALFF 377
            +    G++V  + E +   TTS+VVQS   V+ LD  + AL F
Sbjct: 216 WIALYRGYQVIPNPEGISRATTSTVVQSSLAVLALDFLLTALMF 259