Pairwise Alignments

Query, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  476 bits (1225), Expect = e-138
 Identities = 247/553 (44%), Positives = 347/553 (62%), Gaps = 1/553 (0%)

Query: 75  HGADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKSG 134
           H A +E+L  AA +F+ + EGV++TD +G I+ V+ AF  ITGY RDEVLG+ P +  SG
Sbjct: 280 HKAAQEQLELAANIFENSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPRILNSG 339

Query: 135 RHGPDFYRDMFTSLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSDI 194
           RH   F+  ++ SL + G+W GEIWNRRKSG IYP+  TI  +  D  ++ ++VAVF+DI
Sbjct: 340 RHDKAFFERLWRSLLTNGKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADI 399

Query: 195 SAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNIN 254
           SA K SE ELA L +HDPLT LPNR++ S   EQ L  A   +   AL+ +D+D FK+IN
Sbjct: 400 SAQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHIN 459

Query: 255 DSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDA 314
           DS GH  GD +L  VA R         TLARLG DEF  ++ +       + +  R+ +A
Sbjct: 460 DSYGHVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREA 519

Query: 315 LKEPLRFDDH-ALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEEL 373
              P   DD  ++ + AS+G++++PGD  S   LLRNAD+A+ +AK+ GR+ YA YT+ L
Sbjct: 520 FDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSL 579

Query: 374 TAHAQQRVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEF 433
           T  + + +++   L  A+ +    + YQP   L T + +G EAL+RWE P  G +SPA F
Sbjct: 580 TLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIF 639

Query: 434 IPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRLFARRELYDQVAQVL 493
           IP+AE  GLI ++  WV+ QA  Q  QW   G     ++VNV+     +++   QV +VL
Sbjct: 640 IPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFGRISVNVAGPQLQQKQFCAQVKRVL 699

Query: 494 HDTGLDPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPV 553
            + GL P  LELEVTES +M DP   +E + +L ELGV L++DDFGTGYSSL  LKRLP+
Sbjct: 700 DEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPI 759

Query: 554 QKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQ 613
            KLKIDQ F+  +P D ++ AI + +IAL H++ + + AEG+E  EQAAFL    C+  Q
Sbjct: 760 HKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQ 819

Query: 614 GYWFGRPVAAAQL 626
           GY + +P    +L
Sbjct: 820 GYLYSKPRMVEEL 832