Pairwise Alignments

Query, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  419 bits (1077), Expect = e-121
 Identities = 222/554 (40%), Positives = 335/554 (60%), Gaps = 5/554 (0%)

Query: 77   ADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKSGRH 136
            A+RE L  A+AVF+   EG++VTD++ LI  VN AF  ITGY  +EV G+ P++  S + 
Sbjct: 528  ANRE-LSLASAVFEYCAEGIVVTDKDNLIEAVNPAFTQITGYTLEEVKGRSPAVLNSHQQ 586

Query: 137  GPDFYRDMFTSLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSDISA 196
               FY  M+ SL   G+W GEIWN+RK+G+I+P++  I V++DD G +  ++ +F DIS 
Sbjct: 587  PHHFYEQMWQSLKQYGKWQGEIWNKRKNGQIFPEYLAITVVKDDKGRVVQHIGLFLDISN 646

Query: 197  IKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNINDS 256
             K  E ++ Y +++D LT LPNR L++ R  Q L  A+      A+L +DLD FK IND 
Sbjct: 647  RKKYEQDIWYKSNYDALTNLPNRQLYTSRLSQMLQLAEQRCCSVAVLFIDLDRFKYINDI 706

Query: 257  LGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDALK 316
             GH VGDELL+  A R   L      +ARL GDEF V++ +    G+    A+ IL  L 
Sbjct: 707  YGHAVGDELLQVAAARLEALLEQHDFVARLSGDEFVVVMGHTKHQGEIEQRAQNILQHLS 766

Query: 317  EPLRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAH 376
             P   + + L I+AS+GIS +P +  S   L RNA++A+++AK  GR+ +  ++ ++  +
Sbjct: 767  SPFGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMYQAKQDGRNCFGYFSPDMNNN 826

Query: 377  AQQRVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPI 436
               R+ +   LR A+ Q E  +HYQP+ D ++   + +EAL+RW HP RGLV P EFIPI
Sbjct: 827  MLARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEALLRWRHPQRGLVPPDEFIPI 886

Query: 437  AERTGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRLFARRE---LYDQVAQVL 493
            AE TGLI  +  WV+ QA R + Q    G+ ++ +A+NVS R  A  +       +  +L
Sbjct: 887  AEETGLIEPIGEWVIQQALRDLRQCHSQGIMIN-MAINVSGRQLAHGDPSHFACMLNGLL 945

Query: 494  HDTGLDPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPV 553
                + P  + +E+TES +M D E++L+ +  +R LGV + +DDFGTGYSSL  LK+ P+
Sbjct: 946  QKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSYLKQFPI 1005

Query: 554  QKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQ 613
              +KID+ FV  +  D  DA +++ II +  S+ M++ AEG+E   Q +FL G  C+  Q
Sbjct: 1006 SVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGLGCDFVQ 1065

Query: 614  GYWFGRPVAAAQLD 627
            GY   +P+   +L+
Sbjct: 1066 GYLVAKPMPLKELE 1079