Pairwise Alignments

Query, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  486 bits (1252), Expect = e-141
 Identities = 252/556 (45%), Positives = 357/556 (64%), Gaps = 3/556 (0%)

Query: 74  EHGADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKS 133
           +H    E+L  A  VF  + EGV+VTDR+G I  VN AF  ITGY R+E+LGQ P LF S
Sbjct: 318 KHKEVEEQLTLATNVFKHSFEGVVVTDRHGNITDVNGAFYEITGYSREELLGQNPRLFNS 377

Query: 134 GRHGPDFYRDMFTSLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSD 193
           GRH   F+  M+ +L   G+W+GEIWNRRK G I+PQ  TI  I D+ GEI ++VAVF+D
Sbjct: 378 GRHEKAFFETMWNNLLGGGKWNGEIWNRRKDGTIFPQNITISAIYDEVGEIRYFVAVFAD 437

Query: 194 ISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNI 253
           ISA K SE +LA+LA+ DPLT LPNR+    + +Q +  A+      A + +D+D FK+I
Sbjct: 438 ISAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATVFIDVDLFKHI 497

Query: 254 NDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILD 313
           NDS GH++GDE+L  +A+R R        L+R+G DEF  L+        A A   ++  
Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQ 557

Query: 314 ALKEP--LRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTE 371
             ++P  +   DH L + A++G+SL+P D  +A  LLRNAD+A+++AKS GR+ YA YTE
Sbjct: 558 VFEQPFVVSTGDH-LRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTE 616

Query: 372 ELTAHAQQRVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPA 431
            LT  + + +++   L  AL+Q  L + YQP  DL T + +GVEAL+RW  P  G +SP+
Sbjct: 617 SLTKESIEHLKLQSALYGALEQNALYLMYQPKVDLVTRKTVGVEALLRWNDPILGQISPS 676

Query: 432 EFIPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRLFARRELYDQVAQ 491
            FIP+AE++GLI  +  WV++ AC+Q   W  AG     +AVNV+ +   R    + V +
Sbjct: 677 VFIPVAEKSGLIYDIGLWVLETACQQGVHWLAAGKQFGRIAVNVAGQQLQRNSFVEDVKR 736

Query: 492 VLHDTGLDPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRL 551
           +L  TGL   CLELEVTES +M++P+VA+  +  L +LG+ L++DDFGTGYSSL  LK+L
Sbjct: 737 ILTQTGLPATCLELEVTESVMMNNPDVAIRDLKLLGDLGIVLSVDDFGTGYSSLNYLKKL 796

Query: 552 PVQKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACEL 611
           P+ KLKIDQ FV  +P+D ++ AI + +I L H++ +++ AEG+E  EQA FL    C+ 
Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETAEQADFLTQNLCDQ 856

Query: 612 GQGYWFGRPVAAAQLD 627
            QGY F RP   A ++
Sbjct: 857 AQGYLFSRPQLPADVE 872