Pairwise Alignments

Query, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  424 bits (1089), Expect = e-122
 Identities = 225/539 (41%), Positives = 329/539 (61%), Gaps = 1/539 (0%)

Query: 85   AAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKSGRHGPDFYRDM 144
            ++ V +   E V+V   +  I  VN AF AITGY   ++  +        R   D +  +
Sbjct: 959  SSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSI 1018

Query: 145  FTSLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSDISAIKDSEHEL 204
               L     W+GEIW R K+      W  I  + D  GE SH+VAVF+DI+  K +E +L
Sbjct: 1019 EQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDL 1078

Query: 205  AYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNINDSLGHNVGDE 264
             +LA  D LTGLPNR LF DR   A++ A       ALL LDLD FK+INDS+GH++GD 
Sbjct: 1079 RFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDL 1138

Query: 265  LLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDALKEPLRFDDH 324
            LLK VA R +     G T+ARLGGDEF +++E  ++   A  ++ ++L A + P   DD 
Sbjct: 1139 LLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDK 1198

Query: 325  ALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAHAQQRVEIA 384
            +L I+ SIGISL+P DA     L++ AD+A++ AK+ GR+ +  YT +L   A + +++ 
Sbjct: 1199 SLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLE 1258

Query: 385  FELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPIAERTGLIA 444
              L++A+   EL + YQP   L    L G+EAL+RW+H   G +SPAEFIP+AE TG+I 
Sbjct: 1259 TGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMIN 1318

Query: 445  QVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRLFARRELYDQVAQVLHDTGLDPGCLE 504
            Q+  WV++Q+C+Q+ +W + G +   +AVN+S+R   + ++   +   L  +GL    LE
Sbjct: 1319 QIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL-KADIISTIEVALAVSGLPAKALE 1377

Query: 505  LEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVA 564
            LE+TES +M +P+ ++  + +L+ LG+ +A+DDFGTGYSSL  LKR P+  LKID+ FV 
Sbjct: 1378 LELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVR 1437

Query: 565  GLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQGYWFGRPVAA 623
             +  D DDAAI   IIALAHS+ + V AEG+E +EQ  FL  Q C+  QG+   +P++A
Sbjct: 1438 DITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSA 1496