Pairwise Alignments

Query, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  426 bits (1096), Expect = e-123
 Identities = 229/568 (40%), Positives = 338/568 (59%), Gaps = 6/568 (1%)

Query: 64   ARISRFFAK--GEHGADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRD 121
            AR+SR   +   E     + L +AAAVF+ + EG++VTD +  I  VN AF  ITGY  +
Sbjct: 487  ARMSRAMNRMLSERQKANQALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSLE 546

Query: 122  EVLGQRPSLFKSGRHGPDFYRDMFTSLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDS 181
            +V G+ PS+  S RH   FY  M+ +L    +W GEIWN+RK G++YP++  I V+R++ 
Sbjct: 547  DVKGRSPSMLSSKRHPSHFYTAMWEALQKDSKWEGEIWNKRKDGQVYPEYLAITVVRNER 606

Query: 182  GEISHYVAVFSDISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCA 241
            GEI  ++ +F DIS  K  E +L Y AH D LTGLPNR LF++R +  +  AQ   R  A
Sbjct: 607  GEIIQHIGLFMDISKRKQYEQDLWYQAHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLA 666

Query: 242  LLLLDLDHFKNINDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQP 301
            +LL+DLD FK IND  GH  GD LL+ VA+R   +      +AR+GGDEF +++   +  
Sbjct: 667  ILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNE 726

Query: 302  GQAAALARRILDALKEPLRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKSA 361
                 +A RI++ L  P   ++  + I+AS GI ++P D L    L RN + A+++AK A
Sbjct: 727  FAIEHMASRIIETLSTPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDA 786

Query: 362  GRDGYALYTEELTAHAQQRVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWE 421
            GR+ +  +T  +      R+E+   LRRA+ Q E  +HYQP+ ++ T ++  VEAL+RW+
Sbjct: 787  GRNNFKYFTSGMNQAMFARMELEQRLRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQ 846

Query: 422  HPTRGLVSPAEFIPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSR--L 479
             P  GL+ P +FI IAE TGLI  +  WV++QA   + QWQQ G+ L+ VA+NVSSR  +
Sbjct: 847  DPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQQLGLQLN-VAINVSSRQCV 905

Query: 480  FARRELYDQVAQ-VLHDTGLDPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDF 538
             AR   +DQV Q   +   ++P  + +E+TES +M D    L  +  +R LG ++ IDDF
Sbjct: 906  NARGMGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDF 965

Query: 539  GTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQR 598
            GTGYSSL  LK+ P+  +KID+ FV     +  +  +V+ I+ +  S+ M++ AEGIE  
Sbjct: 966  GTGYSSLSYLKKFPISVIKIDRSFVENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETE 1025

Query: 599  EQAAFLLGQACELGQGYWFGRPVAAAQL 626
             Q   L    C   QGY   +P+  A +
Sbjct: 1026 AQWNLLRDLGCHYAQGYLISKPLPFAAI 1053