Pairwise Alignments

Query, 662 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N2E2

Subject, 734 a.a., GGDEF domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  137 bits (346), Expect = 1e-36
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 19/433 (4%)

Query: 224 EQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSN-PEQASSGYLLLLRVKDLAGLNQ 282
           E+   +++L   +  D LTGL NR +FE  L+  +   PE+     +  L +     +N 
Sbjct: 288 ERHRLADELSFHANYDALTGLPNRSHFEAVLDKLLQQIPEEPIC--VAFLDLDQFQVINN 345

Query: 283 RLGGQRTDQLLQAVGEQLLRECARYPETHNLVTRIRGGEFAVLAPGLVREEALQLAQNLE 342
             G Q  D+LL  V  +L ++  R  +T   V R+ G EFA+L      + A  +AQ + 
Sbjct: 346 VSGHQAGDKLLCQVALRL-KQLVRKGDT---VARLGGDEFAILMHYCNEDTAKVIAQRIC 401

Query: 343 AALASLHATGATDVASVA-SIGLAPFVHGDSPQAVLQL-GDQALAQAESQGEPGWA--CL 398
             L            +V+ S+G+AP   G +   VL    D A   A+ QG  GW   C 
Sbjct: 402 TQLFEHEFYWEHRRHNVSVSMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCA 461

Query: 399 DHSAVASVGDDHHAWHTLLDQALNHQRFELYFQPVVAARDTQVVLHYKVLSRLLDEQGQT 458
               +  +  +  A   ++D AL+  +F+LY+Q +    + Q  +H ++L RL    G+ 
Sbjct: 462 TDPKMNRLYSEMTASVDIID-ALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKM 520

Query: 459 IPAGRFLPWLERFGWTARLDRLMLEQVLRQMAGHE------QSLALNLSSATLADPQALN 512
           +  G FLP  ER+   +R+DR +++ +LR    H         +++NLS+ +L+D + + 
Sbjct: 521 LSPGLFLPAAERYNLASRVDRWVIDNLLRWGGNHLALWQELDMVSVNLSANSLSDQEFME 580

Query: 513 KIFEILRAHSNLGSRLTLEIGEEQLPEQAVLEQ-LTRRLRELGFSLSLQRFGGRFSMIGN 571
            +   L A   L S+L  EI E     Q    Q L   LR LG  L+L  FG  FS    
Sbjct: 581 WLEIRLMAEPELVSKLCFEITETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAY 640

Query: 572 LSRLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELAVIREM 631
           L  L + ++KIDG ++  +      +  + AI +    +D  +IAE VE+E     +RE+
Sbjct: 641 LKLLDVDFVKIDGQFVVNLCDNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLREL 700

Query: 632 GLFGVQGQLVGEP 644
            +   QG  +G+P
Sbjct: 701 EVDYAQGYAIGKP 713