Pairwise Alignments

Query, 721 a.a., Type I secretion system ATPase, LssB family LapB from Pseudomonas fluorescens FW300-N2E2

Subject, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  543 bits (1400), Expect = e-159
 Identities = 300/704 (42%), Positives = 453/704 (64%), Gaps = 13/704 (1%)

Query: 23  DPLLDGLLALCMLHQKPASAAMLTTGLPLPKQRLSVELLSRAAARAGLQGRVLQRKLEQI 82
           DPLLD L+ L      P S+  L  GLPL    L+ +LL +AA+RAGL  ++ ++ L +I
Sbjct: 23  DPLLDCLVLLTEHFGNPCSSDSLAAGLPLSGAVLTPDLLPQAASRAGLAAKLSRKGLNEI 82

Query: 83  PTIAMPALLLLKDGRSAVLLGW-VGDDQARLLLSESDGGEVTISRELLADDYSGKVFFAQ 141
             I +P +LLLKD ++ +L  + +  D+A + L E+ GGE  ++ E L   Y G +F  +
Sbjct: 83  SPILLPCILLLKDKKACILREFDLESDRAVIQLPET-GGEEILTIESLETLYVGYLFLVK 141

Query: 142 PQHKFDVNHGTLIPRARS-WFRDTLKRSRWLYADAIAASLLINIIAMAAPLFVMNVYDRV 200
            +++ D+     +   ++ W   TLK S  +Y DA+ AS+L+NI A+ +PLF+MNVYD+V
Sbjct: 142 QEYRGDMGFDVYLHDNKTHWLVQTLKDSAPIYRDALIASVLVNIFALVSPLFIMNVYDKV 201

Query: 201 VPNQAESTLWVLAVGIIGAYVFDLILKMLRSLCLDLAGKKTDLIISATLFERIVGMSMKY 260
           VPN A  +LWVLA+G   AY+FDL+++ LRS  +D+AGKK D+I+S+ LF + +G+ ++ 
Sbjct: 202 VPNLAFDSLWVLAIGASIAYLFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEK 261

Query: 261 RPARVGSFAQNIHEFQSLRDFLASLTLTSLIDLPFTLLIFMVIAIIGGHLVWIPVLAFPI 320
           R   +G  A+ + EF S+R+ L S T+T+L+DLPF L   +VI I+ G L  IPV+   I
Sbjct: 262 RSPSIGGMAKQLGEFDSIREILTSATITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMI 321

Query: 321 ALLIGYAL--QKPLVATMERTMALGAERQSSLIETLAGLDAVKVNNAESERQYQWEQTIG 378
             +IG+ L  Q  L A +E      + +   LIE+L+ L+++K N AE   Q  W+Q IG
Sbjct: 322 --IIGFTLYTQPKLKAAIEEGNKFSSLKHGHLIESLSALESIKANGAEGIVQKSWQQMIG 379

Query: 379 TLSRLELRVKMLSGLAMNITLLIQQLAGVIMIVFGVYLIIAGNLSMGGLVACYMLSGRAL 438
             +  +L+ K LS    N    I Q   V +++ GVY +    +SMGG++A  MLS RA+
Sbjct: 380 HSANWQLKSKKLSNSVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAI 439

Query: 439 SPLASLSGLLTRYQQARVTMTSVDQMMELP-QERNFDERP--LSRKVLQGAVECRQLNFT 495
           +P+A L+GL+TR   A  T +++ Q+ EL  QE  F+ +   +S++ L G +    + F+
Sbjct: 440 APMAQLAGLMTR---ANHTASALRQLNELMLQEDEFENKGHLVSKQRLIGKINADHVGFS 496

Query: 496 YPNQQNPALKNINLVIKPGEKIGIIGRSGSGKSSLAKLLVGLYQPDDGALLVDGVDIRQI 555
           YP  + P L  ++L I PGE+I IIGR+GSGKS+LAKLLVGL+QP  G+L  DGVD  QI
Sbjct: 497 YPGSEKPVLHPLSLTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQI 556

Query: 556 DVSELRYNIGYVPQDIQLLAGTLRDNLTSGARYVEDELVLQAAELAGVHEFARLHPQGYE 615
             S+LR N GY+PQD+ L  GT+RDN+  G R V +  +++A +L+GV +F  L  +G +
Sbjct: 557 HPSDLRRNFGYLPQDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLD 616

Query: 616 LQVGERGQNLSGGQRQNVALARALLLNPPILLLDEPTSAMDNTGEERLKQRLAAVVENKT 675
            QVGE G +LS GQRQ VALARA L +PP+LL+DEPT+++D   E++  + +  V +++T
Sbjct: 617 QQVGEGGMSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQNVSKDRT 676

Query: 676 VLLVTHRASLLSLVDRLLVIDRGQILADGPKAAVMEALKKGQIS 719
           +LL+TH+  LL LVDR++V++RG ++ADGPKA V+E L  G ++
Sbjct: 677 LLLITHKMHLLQLVDRIIVLERGHVVADGPKAEVLEKLNFGLVN 720