Pairwise Alignments

Query, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

Subject, 460 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  321 bits (823), Expect = 3e-92
 Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 22/448 (4%)

Query: 18  EVNKALIEDAPRVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPSSKIQKVQNLE 77
           +V  A++ DAP   RLTIW +        +WA FA +D+VT G GK IPSS+IQ +Q+L+
Sbjct: 15  DVYGAMMTDAPTSHRLTIWALTSLIFAFLIWAYFAELDQVTVGTGKVIPSSQIQVIQSLD 74

Query: 78  GGIVAELFVKEGQIVEAGAPLIRLDDTRFVSNVGETEADRLSMLLRVERLSAEVDD---- 133
           GG++ ELFV+EG IV  G PL R+DDTRF S+  + E +  S+   V R+  E++     
Sbjct: 75  GGVLQELFVREGNIVAKGEPLARIDDTRFRSDFAQQEEEVFSLQANVIRMRTELNSITVS 134

Query: 134 --------------RPLNFPADVLKAVPGQ-AASEESLYISRRQQLHDEIGGLQEQLIQR 178
                         + L FP D L A   +  A +++ Y  R   L +++  L  Q+ QR
Sbjct: 135 DMASDWREQVRIVKQELIFP-DALSAQKAELVARQQAEYNGRLDNLENQLEILARQIQQR 193

Query: 179 QQELREFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATT 238
           QQE  E  +K A   +   L  +E+ ++ PL  +G V  VE+L+L+R   E +G+L A  
Sbjct: 194 QQENEELTTKIATMTTSFQLISRELELTRPLAQKGIVPEVELLKLERTVNELQGELKAMR 253

Query: 239 LAIPRAESAIKEVQRKIDETRGKFRSDALTQLNEARTDLNKAQATGKALEDRVSRTLVTS 298
              P+ ++ + E   K  E    F +D   QLN+ +T L++        +D+VS+ ++TS
Sbjct: 254 QLRPKIKATLDEAILKRREAVFVFAADTRAQLNDMQTRLSRMSEAQVGAQDKVSKAVITS 313

Query: 299 PVRGIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVKFTA 358
           PV G V  + +NT+GGV+QPG D++EIVP +D +L+EAKI P+DIAFLH G  A VK TA
Sbjct: 314 PVNGTVKTVHINTLGGVVQPGVDIMEIVPSEDQLLIEAKITPKDIAFLHVGLPAVVKVTA 373

Query: 359 YDYTIYGGMKAKLEQIGADTITDEDKKTTYYIIKLRTERSHLGTDE-KPLLIIPGMVASV 417
           YD+T YGG++  +E I ADT  DE+   ++Y+I++RT  S L  D+   + IIPGM+ SV
Sbjct: 374 YDFTRYGGLQGTVEHISADTTQDEE-GNSFYLIRVRTAESSLVKDDGTEMPIIPGMLTSV 432

Query: 418 DIITGKKTVLSYLLKPIIKARAEALHER 445
           D+ITG++++L Y+L PI++A+  AL ER
Sbjct: 433 DVITGQRSILEYILNPILRAKDTALRER 460