Pairwise Alignments

Query, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 2e-92
 Identities = 177/447 (39%), Positives = 267/447 (59%), Gaps = 20/447 (4%)

Query: 18  EVNKALIEDAPRVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPSSKIQKVQNLE 77
           +V  A++ DAP   RL IW +        +WA FA +D VT G GK IPSS++Q +Q+L+
Sbjct: 15  DVYGAMMTDAPTSHRLIIWALAALAFSFLVWAYFAELDRVTTGTGKVIPSSQVQVIQSLD 74

Query: 78  GGIVAELFVKEGQIVEAGAPLIRLDDTRFVSNVGETEADRLSMLLRVERLSAEVDD---- 133
           GGI+ EL+V+EG  V  G PL+R+DDTRF S+  + E +  S+   V RL AE++     
Sbjct: 75  GGIMKELYVREGMTVTKGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRLRAELNSITIS 134

Query: 134 --------------RPLNFPADVLKAVPGQAASEESLYISRRQQLHDEIGGLQEQLIQRQ 179
                         +PL FP ++ ++       +   Y  R   L +++  L  Q+ Q+Q
Sbjct: 135 DVAADWREQVKIAKQPLQFPPELTESEHDLIERQRDEYSGRLDNLSNQLEILARQIQQKQ 194

Query: 180 QELREFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTL 239
           QE  E  SK     +   L  +E+ ++ PL  +G V  VE+L+L+R   + RG+L +  L
Sbjct: 195 QETEELASKINTLTTSFQLVTRELELTRPLADKGIVPEVELLKLERNVNDIRGELSSLRL 254

Query: 240 AIPRAESAIKEVQRKIDETRGKFRSDALTQLNEARTDLNKAQATGKALEDRVSRTLVTSP 299
             P+ +++  E   K  E    + ++A TQLNE +T L++         D+VS+  + SP
Sbjct: 255 LRPKLKASQDEAILKRREAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIVSP 314

Query: 300 VRGIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVKFTAY 359
           V G +  + +NT+GGV+QPG D++EIVP +D +L+E KI P+DIAFLHPG  A VK TAY
Sbjct: 315 VNGTIKTVHINTLGGVVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAY 374

Query: 360 DYTIYGGMKAKLEQIGADTITDEDKKTTYYIIKLRTERSHLGTDEKPLL-IIPGMVASVD 418
           D+T YGG+   +E I ADT  DE+   ++Y++++RTE S L  D+  L+ IIPGM+ +VD
Sbjct: 375 DFTRYGGLNGVVEHISADTTQDEE-GNSFYLVRVRTELSSLTKDDGTLMPIIPGMLTTVD 433

Query: 419 IITGKKTVLSYLLKPIIKARAEALHER 445
           +ITG+++VL Y+L PI++AR  AL ER
Sbjct: 434 VITGQRSVLEYILNPILRARDTALRER 460