Pairwise Alignments

Query, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

Subject, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  333 bits (855), Expect = 5e-96
 Identities = 177/447 (39%), Positives = 272/447 (60%), Gaps = 20/447 (4%)

Query: 18  EVNKALIEDAPRVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPSSKIQKVQNLE 77
           +V  A++ DAP   RL IW +        LWA FA +D VT G GK IPSS++Q +Q+L+
Sbjct: 39  DVYGAMMTDAPSGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQVIQSLD 98

Query: 78  GGIVAELFVKEGQIVEAGAPLIRLDDTRFVSNVGETEADRLSMLLRVERLSAEVDD---- 133
           GGI+ ELFV++G +V  G PL+R+DDTRF S+  + E +   +     R+ AE+D     
Sbjct: 99  GGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAELDSILIS 158

Query: 134 --------------RPLNFPADVLKAVPGQAASEESLYISRRQQLHDEIGGLQEQLIQRQ 179
                         + L FP  +++A P     ++  Y  R   L +++  L  Q+ QRQ
Sbjct: 159 DMTSDWREQVKITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQ 218

Query: 180 QELREFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTL 239
           QE+ +  SK     + + L  +E+ ++ PL  +G V  VE+L+L+RA  + +G+L++  L
Sbjct: 219 QEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRL 278

Query: 240 AIPRAESAIKEVQRKIDETRGKFRSDALTQLNEARTDLNKAQATGKALEDRVSRTLVTSP 299
             P+ ++A+ E   K  E    + +D   QLNE +T L++        +D+VS+ ++TSP
Sbjct: 279 LRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSKAIITSP 338

Query: 300 VRGIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVKFTAY 359
           V G +  + +NT+GGV+QPG D++EIVP +D +L+E KI P+DIAFLH G  A VK TAY
Sbjct: 339 VNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAY 398

Query: 360 DYTIYGGMKAKLEQIGADTITDEDKKTTYYIIKLRTERSHLGTDE-KPLLIIPGMVASVD 418
           D+T YGG+K  +E I ADT  DE+   ++Y+IK+RTE S L  D+   + IIPGM+ +VD
Sbjct: 399 DFTRYGGLKGTVEHISADTSQDEE-GNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVD 457

Query: 419 IITGKKTVLSYLLKPIIKARAEALHER 445
           +ITG++++L Y+L PI++A+  AL ER
Sbjct: 458 VITGQRSILEYILNPILRAKDTALRER 484