Pairwise Alignments

Query, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

Subject, 441 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  189 bits (479), Expect = 2e-52
 Identities = 132/450 (29%), Positives = 226/450 (50%), Gaps = 29/450 (6%)

Query: 11  LHGQPLPEVNKALIEDAP---RVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPS 67
           L+ + LPE       +AP   R+++   + I G    + +W+ F  I+E+ K  G+ IP 
Sbjct: 6   LNHRSLPEHEFTQAIEAPAEKRIIKQITYFIAGSVFIMFVWSLFTNIEEIAKAKGQVIPL 65

Query: 68  SKIQKVQNLEGGIVAELFVKEGQIVEAGAPLIRLDDTRFVSNVGETEADRLSMLLRVERL 127
              Q +Q+  GG +A + V EG +V+ G  L         +   E E+ + +++L++ER 
Sbjct: 66  GHQQVIQSFSGGTLASILVSEGDLVKKGDVLANFIAIDSQAAAEELESKQANLVLKIERY 125

Query: 128 SAEVDDRPLNFPADVLKAVPGQAASEESLYISRRQQLHDE----IGGLQEQLIQRQQELR 183
           SA ++ R  NF A  L++ P         +IS  +++++E    I     ++ + + EL 
Sbjct: 126 SAFIESREANF-ASYLESHPNLVKG----HISDLERMNNEKQAIIQSSLAEIAKSKAELA 180

Query: 184 EFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAIPR 243
               +    +  +   +Q INM E +    AVS + +L       E++ +LD+    +  
Sbjct: 181 SLDQEIPPLKHQITSAQQTINMMESIKESQAVSKLTML-------ESQQKLDSYIRELKS 233

Query: 244 AESAIKEVQRKIDETRGKF---RSDALTQLNEARTDLNKAQATG-----KALEDRVSRTL 295
            E   + + R I+  + +    ++  L ++ EARTD  +A+  G     K+ + +V +  
Sbjct: 234 MEGKQQVLARDIENLQRQLEQKQATLLKEVGEARTDA-QAELLGITARLKSSDSQVQQNT 292

Query: 296 VTSPVRGIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVK 355
           +TSPV GI+  +   + G VIQPG  +  IVP   T L+EAK+ P+DI F+  GQ A +K
Sbjct: 293 ITSPVDGIIQSIPNTSSGSVIQPGGTVAVIVPTTPTALLEAKLSPRDIGFVSVGQKARIK 352

Query: 356 FTAYDYTIYGGMKAKLEQIGADTITDEDKKTTYYIIKLRTERSHLGTDEKPLLIIPGMVA 415
             A+DY+ YG +   +++I   T  DE K   +Y +++  ++ + G     L +IPGM  
Sbjct: 353 IDAFDYSRYGALDGIVKRISPSTDADE-KGGVFYKVQISIDKPYFGDQPDKLELIPGMTG 411

Query: 416 SVDIITGKKTVLSYLLKPIIKARAEALHER 445
             DI+TG KTV  YL KP+     EA  ER
Sbjct: 412 EADIVTGDKTVFQYLWKPVFTNVTEAFGER 441