Pairwise Alignments

Query, 463 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas fluorescens FW300-N2E2

Subject, 455 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  423 bits (1088), Expect = e-123
 Identities = 228/448 (50%), Positives = 301/448 (67%), Gaps = 7/448 (1%)

Query: 5   NRIEVVLIDDDPHLRQALSQTLDLAGLKILPLAEAKGVAGQLPRDWPGVVVSDIRMPGMD 64
           N+ +++++DD+P +  AL Q  +L   + L L +AK +   LP +WPG+V+SD+ MP +D
Sbjct: 7   NQYDILIVDDEPLIGSALVQLFELESYRALALTDAKQIGLGLPDNWPGIVISDVNMPDID 66

Query: 65  GLELLNELHAQDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDHLLDSVRRALAL 124
           GL L+  L AQD ++P++L+TGHGD+ +AVQA++ GAYDF+EKPF ++H+LD  +RAL  
Sbjct: 67  GLSLMRTLLAQDKDIPIILLTGHGDIAMAVQALKQGAYDFIEKPFNNEHMLDIAKRALEK 126

Query: 125 RRLVLDNRSLRLALSDRHELSARLVGQSTPMLRLREQIGALAATRADVLILGETGAGKEV 184
           R L L+NRSL+  L  +     R++G S  + ++R  I  +    ADVLI GETG GKE+
Sbjct: 127 RALTLENRSLKRELESQSTPGPRILGHSPGIKQMRHIIHQVIDMPADVLIEGETGTGKEL 186

Query: 185 VARALHDLSSRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTL 244
           VAR LHD S R    FVAIN GA+ E+++ESELFG E GAFTGA K RIGKFE+ANGGTL
Sbjct: 187 VARYLHDHSPRAEANFVAINCGAIPETIIESELFGAESGAFTGADKTRIGKFEYANGGTL 246

Query: 245 FLDEIESMSLDVQVKLLRLLQERVVERLGGNHQIPLDIRVIAATKEDLRQAADQGRFRAD 304
           FLDEIES  L +QVKLLR+L++R VERLG N  I LDIR+IAATK DL+   D G FR D
Sbjct: 247 FLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIDLDIRIIAATKVDLKSLCDTGEFRQD 306

Query: 305 LYYRLNVAPLRIPPLRERGEDTLMLFQHFADEASARHGLPPHELQPAQRALLLRHSWPGN 364
           L YRLN+  + IP LRER ED  +LF HFA  ASAR+      L     A L+ H WPGN
Sbjct: 307 LLYRLNLVTVPIPALRERREDIGLLFLHFARVASARYHKALIPLTAEYTAQLVSHDWPGN 366

Query: 365 VRELQNAAERFA-LGLELALDNSAPDGNPGAPVEL-VSGGLSEQVENFEKTLIAAELARP 422
           VREL+N AER+  LG E A   S      G   +L  +  L ++VE FE+ LI   L+  
Sbjct: 367 VRELRNLAERYVLLGPEAAFATSL-----GQSSQLNANMSLQQRVEFFERLLIEEALSNN 421

Query: 423 HSSVRSLAEALGIPRKTLHDKLRKHGLH 450
             S++   E L +PRKTL+DK++K GL+
Sbjct: 422 KGSIKLTMEQLELPRKTLYDKMQKFGLN 449