Pairwise Alignments

Query, 428 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 452 a.a., porin from Pseudomonas fluorescens FW300-N2E3

 Score =  267 bits (682), Expect = 6e-76
 Identities = 177/458 (38%), Positives = 248/458 (54%), Gaps = 50/458 (10%)

Query: 7   SMIALGILSTTHAMA-------NDQAESKGFVEDSSLKVLLRNAYINRDYKDGNQDKAEW 59
           SMIAL + + T A          DQA++KGFVE +S  V+L+N Y NR+ K+G QD+ +W
Sbjct: 7   SMIALAVTAATGAQVAMADPFVTDQADAKGFVEGASAGVVLKNYYFNRNNKNGAQDQKDW 66

Query: 60  GQAAIGTFSSGFTQGTVGVGVDAFGLYALRLDGGKGRSGAGGIDFFKQGD-SGNAA---- 114
            Q  +G F+SG+TQGTVGVGV+A+G  A +LDG   +SG G +      D +GN      
Sbjct: 67  TQGVLGKFNSGYTQGTVGVGVEAYGDAAFKLDGTDAQSGTGNMSRTTLRDANGNVIGHDV 126

Query: 115 -DDLSKFGAAVKFRVSNTVLAYGDQMPA-LPVLSYDNSRLLPESYTGTLITSKEIKGLEL 172
              + K GAA+K R+S T L  GD  P+  PV +   SR+  ++ +G  + S EIK L+L
Sbjct: 127 NSQMGKAGAALKVRISKTELKVGDFTPSTAPVFAVGGSRMFQQTASGFQLQSSEIKNLDL 186

Query: 173 NAGRFTAESRKSAEGRDSGGL---------KSINVLGGSYQFTEQFKASLYASDVEDVLK 223
            AG FT  S +  + R +G L         ++ + LGG Y   +    SLY +  +D   
Sbjct: 187 EAGHFTGGSSQD-QTRHNGELWTQYAGTKVEAADYLGGKYGINDNLSVSLYGAKFQDTWT 245

Query: 224 KQYVNANYVFPLAKDQSLTLDFNGYRTKLDNSYVRENNVTGDDNKIWSLAATFA-TGPHS 282
           + Y NANY  PLA DQSL  DFN Y+T  D    +   +   DN  +SLAA ++    H+
Sbjct: 246 QYYGNANYTIPLATDQSLNFDFNLYQTN-DTGAAKAGKI---DNTTYSLAAAYSFLKAHT 301

Query: 283 FTLAHQRSTGDSNLGYAYGGYQREQNRVGDGGNTIYLANS-YWSDFNAEDERSWQLGYGL 341
            TLA Q+  GD+   Y   G   + NR   GG++I+LANS  +SDFN  +E+S Q+ Y L
Sbjct: 302 VTLAFQQVHGDTPFDYIGVG---DNNR---GGDSIFLANSIQYSDFNGPEEKSIQVRYDL 355

Query: 342 DFTTFGVPGLTYNVAYVRGDNITTST------------SEGGTEREIFNQFKYVVQSGPA 389
               +GVPGL++   Y  G  I  +              E G   E   + KYVVQSGP 
Sbjct: 356 KMAEYGVPGLSFMARYAHGQGIDGTKMAADSPYRLYGYGEDGRHNETNLEAKYVVQSGPL 415

Query: 390 KDLSVRLRSSVLRVSQKSSEYNVSGNELRVFVDYPINV 427
           KDLS R R +  R +   +E N+  +E R+  +YPIN+
Sbjct: 416 KDLSFRARQAWHRGNNDQAEGNI--DEFRLITEYPINI 451