Pairwise Alignments

Query, 428 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 419 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  226 bits (575), Expect = 1e-63
 Identities = 158/445 (35%), Positives = 223/445 (50%), Gaps = 43/445 (9%)

Query: 1   MLNKRISMIALGILSTTHAMANDQAESKGFVEDSSLKVLLRNAYINRDYKD----GNQDK 56
           M    IS +AL I + + A    QA   GF++DS+  +  RN Y +RD+ D      Q K
Sbjct: 1   MQKPMISRLALTIAAAS-AFPAVQAAEGGFIDDSTATLQARNYYFSRDFSDIVGKSQQSK 59

Query: 57  AE-WGQAAIGTFSSGFTQGTVGVGVDAFGLYALRLDGGKGRSGAGGIDFFKQGDSGNAAD 115
           AE WGQ  I  F SG+TQGTVGVG+DA GL  L+LD  + R G G       GD G AAD
Sbjct: 60  AEEWGQGFILNFKSGYTQGTVGVGIDAIGLLGLKLDSSRDRVGTG---LLPVGDDGRAAD 116

Query: 116 DLSKFGAAVKFRVSNTVLAYGDQMPALPVLSYDNSRLLPESYTGTLITSKEIKGLELNAG 175
           D S+ GAA+K R+SNT L  G+  P LPVL++ + RLLP +Y G  I S EI GL L  G
Sbjct: 117 DYSRLGAALKVRLSNTELKIGELQPNLPVLTFSDIRLLPPTYQGASIVSNEIDGLTLQGG 176

Query: 176 RFTAESRKSAEGRD-----------SGGLKSINVLGGSYQF-TEQFKASLYASDVEDVLK 223
              + S ++  G D           +G   + N  GG Y F  ++   S + + +ED+  
Sbjct: 177 HLRSTSLRNEAGDDRMRAMLGRTPQTGLSDAFNYAGGDYAFNAKRTSLSAWYAQLEDIYN 236

Query: 224 KQYVNANYVFPLAKDQSLTLDFNGYRTKLDNSYVRENNVTGDDNKIWSLAATFATGPHSF 283
           ++++   +  PL    +L  +   Y ++ D S +     T D+   +SL +    G H+F
Sbjct: 237 QRFIGLKHSEPLG-SWTLGANLGFYDSQEDGSKLAG---TIDNQAFYSLLSA-KRGGHTF 291

Query: 284 TLAHQRSTGDSNLGYAYGGYQREQNRVGDGGNTIYLANSYWSDFNAEDERSWQLGYGLDF 343
            + +Q   GD+        + R    V   GN +    +Y  +F  +DERSWQ  Y  DF
Sbjct: 292 YVGYQAIYGDN-------AFPRVFANVTPLGNEV---PTY--EFAEKDERSWQARYDYDF 339

Query: 344 TTFGVPGLTYNVAYVRGDNITTSTSEGGTEREIFNQFKYVVQSGPAKDLSVRLRSSVLRV 403
              GVPGL   V Y+  DN+ T     G  RE      Y VQSGP K++ VR+R+   R 
Sbjct: 340 AAVGVPGLVATVRYITSDNVDTDNGFEGNARERDLDLGYTVQSGPLKNVGVRIRNVAAR- 398

Query: 404 SQKSSEYNVSGNELRVFVDYPINVF 428
               S Y    +E R+ + Y + +F
Sbjct: 399 ----SNYRSDIDENRLILSYTLTLF 419