Pairwise Alignments

Query, 402 a.a., General secretion pathway protein F from Pseudomonas fluorescens FW300-N2E2

Subject, 407 a.a., general secretion pathway protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  346 bits (887), Expect = e-100
 Identities = 184/406 (45%), Positives = 279/406 (68%), Gaps = 4/406 (0%)

Query: 1   MPTFDYRAEDAQGRRCKGRVEADSPRHARQLLRERGLLPCELLAAKEP----RTLGGWHA 56
           MP F+Y+A DA+G++ KG +EAD+ RHAR  LR++ L+P ++L   E     ++ G    
Sbjct: 1   MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALF 60

Query: 57  GTWLSPADLALLTLQLSTLIQAGLPLEESLGAVAQQSQKRRVAHLLAAVRSRVMEGHALA 116
              +S A+LAL+T Q++TL+ AGLP+EESL AV QQ +K R+A ++ AVRSRV+EG++LA
Sbjct: 61  KRGISVAELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLA 120

Query: 117 TALRAFPQAFPELFCATVAAGEQSGHLGRVLEQLATYTQARQASRQRIQLALVYPLILML 176
            +L  FP  F +L+ A VA+GE+SGHL  VL +LA YT+ RQ  + ++Q A++YP++L L
Sbjct: 121 DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTL 180

Query: 177 ACVAIVAFLLGYVVPDVVKIFVDSGQPLPWLTQALIAMSDGLRRYGLLLLGALAGLLGLW 236
             + +V+ LL  VVP VV  F   G  LP  T+ LIA SD ++ YGLL++  L  LL ++
Sbjct: 181 VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGLLVVLVLGILLVVF 240

Query: 237 RWSLRQPAWRLRWHRLLLRLPLLGEVLRAMEAARFASTLAILSKSAVPLVEALHIAAQVI 296
           +  L+ P +++++H  LL++P++G V + +  ARFA TL+ILS S+VPL++ + IA++V+
Sbjct: 241 QRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVL 300

Query: 297 GNLTIRARMADVARSVREGGTLTRGLELGGDIPPLMLHMIASGERAGELDSMLARAAEQQ 356
            N+ +RA + D    VREG +L+  L      P +ML+MIASGE++G+L+ ML RAA+ Q
Sbjct: 301 QNMRVRAAVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQ 360

Query: 357 EASLAARIALVVSLFEPAMLVLMGGVVLLIVMAILLPILSLNQLVN 402
           +    + + L + +FEP ++V M GVVL IVMAIL PIL+LN L++
Sbjct: 361 DREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLIS 406