Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

 Score =  330 bits (847), Expect = 6e-95
 Identities = 194/466 (41%), Positives = 276/466 (59%), Gaps = 23/466 (4%)

Query: 9   RAVVAVVGLLLTALAVDAVAETKVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLV 68
           R V  + G +L A+A    A   +  VR+W +PD TR+V D+   V +S FTL++P+RLV
Sbjct: 15  RFVFLLFGFVLLAIAPQTWANV-LEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLV 73

Query: 69  IDINGASLGAPLNVATANTPITAMRSAQRTP--TDLRVVIDLKKAVTPKSFTLAPN--AQ 124
           +D+  ++  A L V    + I +   A   P  +  R+V +LK+  TP  F LAP    Q
Sbjct: 74  VDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQ 133

Query: 125 YGNRLVVDLFDNPADATPPPPPTNVATVPAVPVTPTEPALKLPPAPAGKRDIIVVIDAGH 184
           YG+RLV+D+       +      + A+ P+ P   ++ A +L     G  DI+V IDAGH
Sbjct: 134 YGHRLVIDMPHGKVSES------SSASTPSSPAQVSKDASQL----LGNDDIVVAIDAGH 183

Query: 185 GGEDPGASGSRGQREKDVVLSIARELQRQVNGMKGFRAELTRTGDYFIPLRGRTEIARKK 244
           GGEDPG+ G   + EKD+ LS++++L  Q+N + G +A LTR GDYF+ L  RTEIAR+ 
Sbjct: 184 GGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRS 243

Query: 245 GADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNV-SLDD 303
            A L VS+HADA  +    G SVF L+ R A +E ARW+ + E +S+L+GGAG V S  +
Sbjct: 244 KAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTN 303

Query: 304 KDRMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSIL 363
            DR ++  LLDL  + S      V   +L  +G+V  LHK     A   VLKSPDIPS+L
Sbjct: 304 NDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVL 363

Query: 364 VETGFISNANEASKLSSANHQQALARSISSGVRQFFQQNPPPGTYIAWLRDSGKIAQGPR 423
           VETGFISN +E   L   +HQ  LAR++++ + Q+F+ NPP GT  A   + GK     +
Sbjct: 364 VETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFA---NRGK----AQ 416

Query: 424 DHRVSPGETLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTIPGN 469
            H+V  GE++ +IA +Y VS   L+ ANNLKS  + +GQ LTIP +
Sbjct: 417 KHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS 462



 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 423 RDHRVSPGETLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTIP 467
           R H+V  GE L+ IA +Y VS  ++R AN L++D+L +GQ L IP
Sbjct: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579



 Score = 41.2 bits (95), Expect = 9e-08
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 425 HRVSPGETLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTI 466
           H V  G+ L  +A  Y+VS A+++  NNLKSD L +GQ L I
Sbjct: 484 HVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525