Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 435 a.a., N-acetylmuramoyl-L-alanine amidase (RefSeq) from Shewanella amazonensis SB2B

 Score =  343 bits (879), Expect = 9e-99
 Identities = 198/461 (42%), Positives = 275/461 (59%), Gaps = 35/461 (7%)

Query: 11  VVAVVGLLLTAL-AVDAVAETKVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLVI 69
           +++ +  +LT L +V A+A  +++ VR+W AP++TR+VFDLT    ++  TL  PDRLV+
Sbjct: 4   IISRLFFVLTLLFSVGALAANQLDGVRIWAAPESTRVVFDLTAKPSYTHSTLVGPDRLVL 63

Query: 70  DINGASLGAPLNVATANTPITAMRSAQRTPTD--LRVVIDLKKAVTPKSFTLAPNAQYGN 127
           D++       L     N+ +       + P    LR+VIDL + V    F+L P A YGN
Sbjct: 64  DLSDTQSKVALGKIANNSKLVKRVRLSKPPAKGILRLVIDLNRPVNANLFSLPPTAPYGN 123

Query: 128 RLVVDLFDNPADATPPPPPTNVATVPAVPVTPTEPALKLPPAPAGKRDIIVVIDAGHGGE 187
           RLVVDL +  +++     P                       P+  RDIIV IDAGHGG+
Sbjct: 124 RLVVDLEEKTSESKAIVAP-----------------------PSSLRDIIVAIDAGHGGD 160

Query: 188 DPGASGSRGQREKDVVLSIARELQRQVNGMKGFRAELTRTGDYFIPLRGRTEIARKKGAD 247
           DPG+ G  G  EK +   IA+ +Q +++   G +A LTRTGDY+I    R+E+ARK  AD
Sbjct: 161 DPGSIGPSGLYEKKIAFEIAKRVQAKIDATPGMKAVLTRTGDYYIHPNKRSELARKHRAD 220

Query: 248 LFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLD-DKDR 306
           L VSIHADA  S    GASV+ LS R A SE  RWL   E  S+L+GGAG +  + D ++
Sbjct: 221 LLVSIHADAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNADNEQ 280

Query: 307 MLAGVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVET 366
            LA  LLD+SM  S+  S ++   VL  +G+VT LHK   E A    LKSPDIPSILVET
Sbjct: 281 YLAMTLLDMSMDRSMAISHSIAGDVLKELGKVTDLHKNLPESASLAALKSPDIPSILVET 340

Query: 367 GFISNANEASKLSSANHQQALARSISSGVRQFFQQNPPPGTYIAWLRDSGKIAQGPRDHR 426
           GFISN  E S L S++HQ+ LA++I +GV ++F+ NPP  + IA        ++    H+
Sbjct: 341 GFISNPKEESLLKSSSHQERLAKAIHTGVLRYFETNPPSDSLIA--------SRANSQHK 392

Query: 427 VSPGETLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTIP 467
           VS GE+L++IA +Y +S  +L+ ANNLKSD L++GQ L IP
Sbjct: 393 VSRGESLSVIAAQYGISVISLKQANNLKSDTLRVGQKLVIP 433