Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 439 a.a., N-acetylmuramoyl-L-alanine amidase (RefSeq) from Shewanella loihica PV-4

 Score =  346 bits (888), Expect = e-100
 Identities = 207/456 (45%), Positives = 274/456 (60%), Gaps = 35/456 (7%)

Query: 17  LLLTALAVDAVAET--KVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLVIDINGA 74
           LL+  L + +VA +  K+  VR+W AP++TR+VFDL  P ++S FTLT+P RLV+D+   
Sbjct: 12  LLIVLLCIPSVAYSANKLEGVRIWAAPESTRVVFDLREPPKYSHFTLTSPYRLVVDLTTT 71

Query: 75  SLGAPLNVATANTPITAMRSAQRTPTD--LRVVIDLKKAVTPKSFTLAPNAQYGNRLVVD 132
           + G  LN    N+ +       + P    LR+VIDL K      F L+P A YGNRLVVD
Sbjct: 72  ATGLDLNKIENNSKLVKRVRISKPPKKGTLRLVIDLVKPAKANLFALSPTAPYGNRLVVD 131

Query: 133 LFDNPADATPPPPPTNVATVPAVPVTPTEPALKLPPAPAGKRDIIVVIDAGHGGEDPGAS 192
           L     +     P T             EP  KL       RDIIV IDAGHGG+DPG+ 
Sbjct: 132 L-----EGGNQSPKT----------VKVEPEQKL-------RDIIVAIDAGHGGDDPGSI 169

Query: 193 GSRGQREKDVVLSIARELQRQVNGMKGFRAELTRTGDYFIPLRGRTEIARKKGADLFVSI 252
           G  G  EK V L IA++++ ++N   G RA +TR+GDYF+ L  R+EIAR   ADL VSI
Sbjct: 170 GPSGIYEKKVALQIAKKVEAKINATPGMRAIMTRSGDYFVNLNKRSEIARNSKADLLVSI 229

Query: 253 HADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLD-DKDRMLAGV 311
           HADA  S    GASV+ LS R A SE  RWL   E  S+L+GGAG +  + D ++ LA  
Sbjct: 230 HADAFTSPQPQGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNADNEQYLAMT 289

Query: 312 LLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFISN 371
           LLD+SM  S+  S N+   VL+N+G+VT LHK + E A   VLKSPDIPSILVETGFISN
Sbjct: 290 LLDMSMDRSMAISHNIAGDVLANLGKVTRLHKHKPEAASLAVLKSPDIPSILVETGFISN 349

Query: 372 ANEASKLSSANHQQALARSISSGVRQFFQQNPPPGTYIAWLRDSGKIAQGPRDHRVSPGE 431
             E   L+  +HQ  +A ++  GV ++F+ NPP  T +A        ++    H+V+ GE
Sbjct: 350 HKEERLLTQRDHQNNIANAVHKGVVRYFENNPPANTMMA--------SKSGIKHKVTAGE 401

Query: 432 TLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTIP 467
           +L++IA RYQVS  +++ AN LKS+ L IGQ L IP
Sbjct: 402 SLSVIAHRYQVSVDSIKKANKLKSNTLYIGQKLIIP 437