Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 463 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  358 bits (918), Expect = e-103
 Identities = 207/463 (44%), Positives = 280/463 (60%), Gaps = 21/463 (4%)

Query: 14  VVGLLLTALAVDAVAETKVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLVIDING 73
           ++ LL T  AV A A  ++ SVR+W AP++TR+VFDL+    +S FTL  P+RLV+D+  
Sbjct: 11  IILLLCTFFAVAAQAANQLESVRIWAAPESTRIVFDLSEVPNYSYFTLDGPNRLVVDLKK 70

Query: 74  ASLGAPLNVATANTPITAMRSAQRTPT--DLRVVIDLKKAVTPKSFTLAPNAQYGNRLVV 131
           AS    L     N+ +       ++PT  DLR+VIDL K + P  F+L   A YGNRLVV
Sbjct: 71  ASTKLNLKNVDNNSKLVKGIRVSKSPTKGDLRLVIDLVKPLNPNLFSLPVTAPYGNRLVV 130

Query: 132 DLFDNPADATPPPPPTNVATVPAVPVTPTEPALKLPPAPAGKRDIIVVIDAGHGGEDPGA 191
           DL D  A           A + AV  TP +    +  +    RDI++ IDAGHGG+DPG+
Sbjct: 131 DLEDKSA----------TAELSAVSSTPVKK--NVTQSVQASRDIVIAIDAGHGGDDPGS 178

Query: 192 SGSRGQREKDVVLSIARELQRQVNGMKGFRAELTRTGDYFIPLRGRTEIARKKGADLFVS 251
            G  G  EK VV  I++ L  ++N   G RA + R+GDYF+ L  R+E+AR   ADL +S
Sbjct: 179 IGPSGLYEKKVVFEISKRLASKINDTPGMRAVMIRSGDYFVNLNRRSELARNSKADLLIS 238

Query: 252 IHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLD-DKDRMLAG 310
           IHADA  S    GASV+ LS R A SE  RWL   E  S+L+GGAG +  + D ++ LA 
Sbjct: 239 IHADAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAM 298

Query: 311 VLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFIS 370
            LLD+SM +S+    +V   +L ++G VT LHK R E A F VLKSPDIPSILVETGFIS
Sbjct: 299 TLLDMSMNSSMAIGHSVAGDILKDLGAVTELHKSRPESASFAVLKSPDIPSILVETGFIS 358

Query: 371 NANEASKLSSANHQQALARSISSGVRQFFQQNPPPGTYIAWLRDSGKIAQ------GPRD 424
           N  E   LSS+ HQ+++A +I  GV ++F  NPP  T +A    +G   +      G   
Sbjct: 359 NPKEERLLSSSRHQESIATAIYKGVNRYFHNNPPADTLLAKKNTTGSTVKSSSKSAGTIK 418

Query: 425 HRVSPGETLAMIAVRYQVSPATLRSANNLKSDELKIGQTLTIP 467
           H+VS GE+L+ IA RY+V  A++  AN +K+D +++GQTL IP
Sbjct: 419 HKVSRGESLSAIAQRYKVPMASIIRANGMKTDVVQLGQTLVIP 461