Pairwise Alignments

Query, 929 a.a., Sensor histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  249 bits (637), Expect = 6e-70
 Identities = 163/526 (30%), Positives = 273/526 (51%), Gaps = 24/526 (4%)

Query: 398  KAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDIS 457
            K+EFLA +SHEIRTPMN ++GM +L   T L+ +Q+DY++    +   LL +IN+ILD S
Sbjct: 674  KSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSAQSLLRIINDILDFS 733

Query: 458  RLESGQIELDDVQFDLNALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQA 517
            ++E+G++EL+ V F L+ +++  L +   KA++Q VEL+ +       ++ GDP RL Q 
Sbjct: 734  KIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQV 793

Query: 518  LLSLLENALKKTDEGEV-LIVVALDERSNQPRLRIAVQDSGTPMDAEERDTLMHAELHSK 576
            L++LL NA+K T  GE+ L    + ER ++  L+  V+D+G  +  ++++ L  A   + 
Sbjct: 794  LINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQAD 853

Query: 577  NFLSATRLGGNLGLVIARQLIILMHGEFGIKSGSNQGSTLWLTLPLD-PDRLEHPTADLD 635
               +    G  LGL I++ L+ +M G+  ++S    GST   T+  +  +  +     + 
Sbjct: 854  GSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIAEEAKIEPLVVP 913

Query: 636  GPLQGARVLIVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLL 695
              L   R L+VDDN T  ++       +   V    SG EAL  L      RD  D++LL
Sbjct: 914  EKLNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLS-----RDPIDLLLL 968

Query: 696  DQNMPGMTGMQLAAKIK---EDPSLNHDILLIMLTGISNAPSKIVARNSGVKRILAKPVA 752
            D  MP M G  + + I     +  +    ++IM+T  +  P      ++ V  +L KP  
Sbjct: 969  DWMMPEMDGSDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLLHEVDSANVFAVLQKPFK 1028

Query: 753  GYTL----KTTLADELNQRNRGQATNVQVNAGPPLPVKVPSDFRILVAEDNSISTKVIRG 808
              +L        ADE           V V  G    +       +L+ EDN I+ +V   
Sbjct: 1029 ASSLFDEIIAAFADEPRLNVVQPIAEVAVEEGEHTGL-------VLLVEDNFINQQVATE 1081

Query: 809  MLGKLNLQPDTASNGEEALKAMKEQRYDLVLMDCEMPILDGFSATQQLRAWEMGNQRTRT 868
            +L     +   A NG+ AL  +  + +D VLMD +MP++DG +A + LR     +     
Sbjct: 1082 LLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTAARALRERYSADV---L 1138

Query: 869  PVVALTAHILAEHKERARQAGMDGHMAKPVELSQLRELIEHWVAQR 914
            P++A+TAH ++  +E++  AGM+ H+ KP+ L++L E + HW+  +
Sbjct: 1139 PIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWIKHK 1184