Pairwise Alignments

Query, 335 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 330 a.a., putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  211 bits (538), Expect = 2e-59
 Identities = 106/277 (38%), Positives = 167/277 (60%), Gaps = 2/277 (0%)

Query: 12  QNGLVLAPMAGVTDQPFRQLCKRLGAGLVVSEMVTSDMSLWNTRKSRLRMIHEGDPEPRS 71
           ++ ++LAPM  VTD  FR +CK+ GA +V +E V+SD  +    K+  ++    +  P +
Sbjct: 10  EHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLSISDEERPVA 69

Query: 72  VQIAGGDAQMLAEAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEALVTEILQAV 131
           +QI G D + + EAA+   +    I+DIN GCP K+V  K AG+ +L++   + EI +AV
Sbjct: 70  IQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAV 129

Query: 132 VAAVDVPVTLKIRTGWDRENKNGLVVAKIAEQAGITALAVHGRTRADLYTGDAEYDTIAA 191
           V AV +PVT+K R GWD  NK  + +A+  +  GI AL +HGRTRA +YTG+A++  I  
Sbjct: 130 VDAVKIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGE 189

Query: 192 IK--QAVSIPVFANGDIDSPEKARYVLDATGADGLLIGRAAQGRPWIFREIEHFLRTGEK 249
           +K  Q + IP+  NGD+ +P++ +   D  G D ++IGRA+ GRPWIF+E++H+L TGE+
Sbjct: 190 VKNNQRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEVKHYLETGEE 249

Query: 250 LAAPQLSEVERILLEHLAALHAFYGEVMGVRIARKHV 286
           L          +L + +        E  G+   R+H+
Sbjct: 250 LPPLSFEWCMEVLRQEVIDSVNLLDERRGILHVRRHL 286