Pairwise Alignments

Query, 328 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 358 a.a., oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  295 bits (755), Expect = 1e-84
 Identities = 166/341 (48%), Positives = 211/341 (61%), Gaps = 23/341 (6%)

Query: 5   VLHVEDLSV-IAGHGEDEVT------LVDRVSFDLAKGEILGLVGESGSGKTMACRALMR 57
           +L V DLSV   G  E + T       V  +SF +A G  L LVGESG GK+M   AL+R
Sbjct: 17  LLDVRDLSVEFPGRPEADGTPGAPLRAVAGISFSIAPGGTLCLVGESGCGKSMTALALLR 76

Query: 58  LLPSANLRVQGKALRLAGEDLLSLDEAGMRGIRGRRLGMIFQNPGSHLDPLMRIGEQIGE 117
           L+P    RV   ++RL G +LL+L E  MRG+RGR + MIFQ P + L+P+ R+GEQI E
Sbjct: 77  LVPEPG-RVASGSVRLEGRELLTLPEPEMRGVRGRSISMIFQEPMTSLNPVFRVGEQIAE 135

Query: 118 GIRLHQGASKREARAKAIDVLRQVGIPDPLTRVDSYPHEFSGGMRQRAMIAVALGCNPQV 177
           G+RLH G S+ +A A+A+D+LRQVGIP P  R   +PH+ SGGMRQR MIA+AL C+P++
Sbjct: 136 GVRLHLGLSRSDAAARAVDLLRQVGIPSPELRARDFPHQMSGGMRQRVMIAMALACDPRL 195

Query: 178 LIADEPTTALDVTVQAQILRLLLDLRDQRGLSIIMITHDLGIVAQTCDSIAVMYAGRLCE 237
           LIADEPTTALDVT+Q QILRL+ DL   RG S+++ITHDLG+VA+T D +AVMYAGR+ E
Sbjct: 196 LIADEPTTALDVTIQRQILRLMRDLAAHRGASVLLITHDLGVVAETADHVAVMYAGRIME 255

Query: 238 HGNKLDLLAHPRHPYTAALIDCQPATSAG--HAMLKTIAGQPPLLDALPSGCRFNPRCLQ 295
           H +  D  A P HPY   L+   P   +G     L  I G  P L ALPSGC F  RC  
Sbjct: 256 HASVGDFFARPLHPYAQGLMRSVPQAVSGPRAERLSAIPGTVPPLWALPSGCTFRDRCPH 315

Query: 296 QGSQCTRLLPQMQV-------------TAEAHRVACHYPLP 323
             ++C    P +                A+AH V C    P
Sbjct: 316 AFARCAEQEPPLLAMPPQALAATPTDNAAQAHGVRCWLHAP 356