Pairwise Alignments

Query, 160 a.a., tmRNA-binding protein SmpB from Pseudomonas fluorescens FW300-N2E2

Subject, 163 a.a., SsrA-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  179 bits (455), Expect = 1e-50
 Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   AKQKKHPTGTIAQNKKARHDYFIEQRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKDGEA 61
           AK+ K+P  TIA+NK+A  DY  E++FEAG+ L GWEVKS+R GK  L +SYV L+DGEA
Sbjct: 6   AKKSKNPPATIARNKRANFDYKFEEKFEAGLSLMGWEVKSIRVGKVNLSESYVFLRDGEA 65

Query: 62  WLLGSHITPLTTASTHVIADPVRSRKLLLNKRELEKLFASVQQKGYTCVCTSLYWSKHL- 120
           +L G  ITPL TASTHV+ DP+R RKLLLN+REL+KL   V+++GY+ V  S+YW K+  
Sbjct: 66  YLFGCTITPLNTASTHVVCDPMRDRKLLLNRRELDKLQGLVERQGYSIVPISMYWRKNAW 125

Query: 121 IKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGK 158
           +K EI LGKGKKE+DKRD  +ER+   E  R +++  +
Sbjct: 126 VKLEIGLGKGKKEHDKRDDTKEREWKIEKSRTMKHAAR 163