Pairwise Alignments

Query, 378 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Pseudomonas fluorescens FW300-N2E2

Subject, 386 a.a., carbamoyl-phosphate synthase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  557 bits (1435), Expect = e-163
 Identities = 274/371 (73%), Positives = 311/371 (83%)

Query: 1   LTKPAILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHI 60
           LTK A+L L DG++F G AIGADG +VGEVVFNT+MTGYQEILTDPSY++QIVTLTYPHI
Sbjct: 5   LTKSALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 64

Query: 61  GNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNTMSLSDYLKANNVVAIAGIDTRRLTR 120
           GNTGT  ED ES+ V + GL+IRDLPL+AS++RN  +LSDYLKANNVV IA IDTR+LTR
Sbjct: 65  GNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTR 124

Query: 121 ILREKGAQNGCIMAGDNISEEAAIAAAQGFPGLKGMDLAKVVSTKKQYEWRSTVWDLKTD 180
           ILREKGAQ GCIMAG ++ E  A+AAA+ FPGLKGMDLAK V+T K Y WR   W L   
Sbjct: 125 ILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAYPWRKGSWRLVGG 184

Query: 181 SHATIEASELPYHVVAYDYGVKLNILRMLVERGCRVTVVPAQTPAADVLALKPDGVFLSN 240
             A   A  L Y VVAYDYGVK NILRMLV+RGC VTVVPA+TPA++VLA+ PDGVFLSN
Sbjct: 185 LPADTPAEALKYKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLSN 244

Query: 241 GPGDPEPCDYAIQAIKDVLETEIPVFGICLGHQLLALASGAKTLKMGHGHHGANHPVQDL 300
           GPGDPEPCDYAI+AI+ +L+T+ P+FGICLGHQLLALASGAKTLKM  GHHGANHPV ++
Sbjct: 245 GPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNI 304

Query: 301 DTGVVMITSQNHGFAVDEATLPANVRAIHKSLFDGTLQGIERTDKSAFSFQGHPEASPGP 360
           + G VMITSQNHGFA DEATLPAN++  HKSLFDG+LQGI  TDK AFSFQGHPEASPGP
Sbjct: 305 EKGNVMITSQNHGFAADEATLPANIKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEASPGP 364

Query: 361 NDVAPLFDRFI 371
           ND APLFD FI
Sbjct: 365 NDAAPLFDHFI 375