Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 516 a.a., NusA antitermination factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  420 bits (1080), Expect = e-122
 Identities = 221/490 (45%), Positives = 337/490 (68%), Gaps = 4/490 (0%)

Query: 4   EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
           E++ V ++V+ +K +    +F A+E A+  A + ++  E D+R  I+R TG     R   
Sbjct: 11  ELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARYIE 70

Query: 64  VVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
           VVEE + +   I    +K  +     ++G+ + + +  I+FGRIAAQTAKQVIVQKVR+A
Sbjct: 71  VVEEVENEFTQITLAGAKRKKAD--IELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 128

Query: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
           ER +    Y++RLGEII+G VK+V   NVIVD+G  AEALL R+++I RE F+ G R+RA
Sbjct: 129 ERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGR-AEALLRRDEVIPREHFKNGDRIRA 187

Query: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
            + ++R E RGPQ+ LSRT  + + +LF  EVPEI +G+IE+ + +RDPGSRAKIAV S 
Sbjct: 188 YIMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSN 247

Query: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
           D  IDP GAC+GMRGSRVQAV  EL GE++DI+ W  +PA FV+NA++PAEVA +++DE+
Sbjct: 248 DHAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEE 307

Query: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
           A+ +++ V  + L+ AIGR GQNVRLAS+LTGW ++++TE++   ++Q E     + FIE
Sbjct: 308 ANRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIE 367

Query: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
            L+VD+ +A +LV EGFT++E++A+V + E+  I+GFDE++ +EL+ RA+  L  +    
Sbjct: 368 ALDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLN 427

Query: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDI-DGIDDDRAGK 482
           EE+  +    +++  +EG+   + + L  +GV T +DL + + D+L++I  G+++D A  
Sbjct: 428 EERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANA 487

Query: 483 LIMAARAHWF 492
           +IMAARAHWF
Sbjct: 488 VIMAARAHWF 497