Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella loihica PV-4

 Score =  627 bits (1616), Expect = 0.0
 Identities = 323/495 (65%), Positives = 403/495 (81%), Gaps = 3/495 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE+ALATATKK++E ++++RV I+R TG YETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFR 60

Query: 61  RWTVVEEAD--LDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118
           RW VVE+    L++P  E         +P  +VG+ +E++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQ 120

Query: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178
           KVREAERAQ+VD + E+ GE+I+G VKK  R++V+VDLGNNA+A+L +ED+ISRE+FR G
Sbjct: 121 KVREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPG 180

Query: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238
            R+RALL  +R E RG QL L+RT P+MLIELFR+EVPEIA+ +IE+M A+RDPGSRAKI
Sbjct: 181 DRVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKI 240

Query: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298
           AV+S D+RIDP GAC+GMRG+RVQAVS ELGGERVDIVLWDDNPAQFVINAM+PA+VA+I
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300

Query: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358
           IVDED H+MDIAV AD+LAQAIGR GQNVRLA+QL+GW LNVMT  D+QAK QAE+  I+
Sbjct: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIV 360

Query: 359 RNFIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLT 418
             F+  L+VDE+ AQVL DEGFTSLEE+AYVP  E+L IDGFDEEIV  LR RAK  + T
Sbjct: 361 NLFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAIST 420

Query: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDD 478
           +A+A+EE L  A P+EDLL+LEG+++ LA  LA +GVIT EDLAEQ IDDL++I+ + ++
Sbjct: 421 RALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEELTEE 480

Query: 479 RAGKLIMAAR-AHWF 492
           +AG+LIMAAR   WF
Sbjct: 481 KAGELIMAARNICWF 495